Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EG882_RS15560 Genome accession   NZ_CP033967
Coordinates   3053605..3054855 (-) Length   416 a.a.
NCBI ID   WP_124693036.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3048605..3059855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS15545 (EG882_15545) rny 3049190..3050749 (-) 1560 WP_003154140.1 ribonuclease Y -
  EG882_RS15550 (EG882_15550) - 3051042..3052223 (-) 1182 WP_015239879.1 serine hydrolase domain-containing protein -
  EG882_RS15555 (EG882_15555) recA 3052391..3053434 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  EG882_RS15560 (EG882_15560) cinA 3053605..3054855 (-) 1251 WP_124693036.1 competence/damage-inducible protein A Machinery gene
  EG882_RS15565 (EG882_15565) pgsA 3054873..3055454 (-) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EG882_RS15570 (EG882_15570) - 3055527..3056426 (-) 900 WP_014417801.1 RodZ domain-containing protein -
  EG882_RS15575 (EG882_15575) - 3056445..3057236 (-) 792 WP_007409819.1 YmfK family protein -
  EG882_RS15580 (EG882_15580) - 3057364..3057621 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  EG882_RS15585 (EG882_15585) - 3057697..3058425 (-) 729 WP_015239877.1 SDR family oxidoreductase -
  EG882_RS15590 (EG882_15590) - 3058485..3059771 (-) 1287 WP_015239876.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45070.36 Da        Isoelectric Point: 5.0653

>NTDB_id=327485 EG882_RS15560 WP_124693036.1 3053605..3054855(-) (cinA) [Bacillus velezensis strain 1B-23]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTEDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDASLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDLQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=327485 EG882_RS15560 WP_124693036.1 3053605..3054855(-) (cinA) [Bacillus velezensis strain 1B-23]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCGAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGAAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGTGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CGCCGCTTGCCGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATGCGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTTA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACACTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCTGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.663

100

0.897
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment