Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FNV62_RS19565 Genome accession   NZ_CP041610
Coordinates   4259310..4259990 (-) Length   226 a.a.
NCBI ID   WP_060897739.1    Uniprot ID   A0A250V856
Organism   Streptomyces sp. RLB3-17     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4254310..4264990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS19555 (FNV62_19845) - 4256760..4257758 (+) 999 WP_054231897.1 hypothetical protein -
  FNV62_RS19560 (FNV62_19850) clpX 4257852..4259138 (-) 1287 WP_054231969.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FNV62_RS19565 (FNV62_19855) clpP 4259310..4259990 (-) 681 WP_060897739.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV62_RS19570 (FNV62_19860) clpP 4260128..4260733 (-) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV62_RS19575 (FNV62_19865) tig 4261163..4262569 (-) 1407 WP_060897740.1 trigger factor -
  FNV62_RS54625 - 4263453..4263626 (-) 174 WP_169081042.1 hypothetical protein -
  FNV62_RS19590 (FNV62_19880) - 4263754..4264071 (-) 318 WP_225900299.1 TMEM175 family protein -
  FNV62_RS19595 (FNV62_19885) - 4264438..4264632 (-) 195 WP_054231893.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24954.42 Da        Isoelectric Point: 4.6288

>NTDB_id=327199 FNV62_RS19565 WP_060897739.1 4259310..4259990(-) (clpP) [Streptomyces sp. RLB3-17]
MNDFPGSGIYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNSSAIV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=327199 FNV62_RS19565 WP_060897739.1 4259310..4259990(-) (clpP) [Streptomyces sp. RLB3-17]
GTGAACGACTTCCCCGGCAGCGGCATCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTTACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGGCAGGCGGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCCGCGAACGAGATCCTTCGGATGCGCGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTCGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGCAAGATGAACAGTTCCGCGATCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250V856

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376