Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG359_RS10010 | Genome accession | NZ_CP033926 |
| Coordinates | 2186848..2187501 (+) | Length | 217 a.a. |
| NCBI ID | WP_076352711.1 | Uniprot ID | - |
| Organism | Chryseobacterium joostei strain DSM 16927 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2181848..2192501
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG359_RS09995 (EG359_10100) | aceA | 2182236..2183516 (-) | 1281 | WP_076352708.1 | isocitrate lyase | - |
| EG359_RS10000 (EG359_10105) | aceB | 2183577..2185151 (-) | 1575 | WP_076352709.1 | malate synthase A | - |
| EG359_RS10005 (EG359_10110) | - | 2185278..2186750 (+) | 1473 | WP_076352710.1 | helix-turn-helix domain-containing protein | - |
| EG359_RS10010 (EG359_10115) | comF | 2186848..2187501 (+) | 654 | WP_076352711.1 | ComF family protein | Machinery gene |
| EG359_RS10015 (EG359_10120) | - | 2187601..2188287 (+) | 687 | WP_076352712.1 | alpha/beta fold hydrolase | - |
| EG359_RS10020 (EG359_10125) | upp | 2188292..2188942 (-) | 651 | WP_076352713.1 | uracil phosphoribosyltransferase | - |
| EG359_RS10025 (EG359_10130) | der | 2189097..2190407 (-) | 1311 | WP_076352714.1 | ribosome biogenesis GTPase Der | - |
| EG359_RS10035 (EG359_10140) | - | 2190884..2191408 (-) | 525 | WP_076352715.1 | antirestriction protein ArdA | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25524.53 Da Isoelectric Point: 7.7353
>NTDB_id=327200 EG359_RS10010 WP_076352711.1 2186848..2187501(+) (comF) [Chryseobacterium joostei strain DSM 16927]
MILDLLFPNRCIHCNRIIEPDFLVCNLCFNQIHFTHYDYFESNPIKEKCNLLFPVENTYALIRFEEESLSRKIIHELKYR
SREITGKILAEWTTERLDFKNQRPDLMVSVPLHPRKLRERGYNQLHLFTETLSKFYSIPCDHQLIKRNHYSKAQALKDKQ
HRLETVNPFSITQPITGKHILLIDDVFTTGNTISSIAWEIINVGDNKVSILVIAVDV
MILDLLFPNRCIHCNRIIEPDFLVCNLCFNQIHFTHYDYFESNPIKEKCNLLFPVENTYALIRFEEESLSRKIIHELKYR
SREITGKILAEWTTERLDFKNQRPDLMVSVPLHPRKLRERGYNQLHLFTETLSKFYSIPCDHQLIKRNHYSKAQALKDKQ
HRLETVNPFSITQPITGKHILLIDDVFTTGNTISSIAWEIINVGDNKVSILVIAVDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327200 EG359_RS10010 WP_076352711.1 2186848..2187501(+) (comF) [Chryseobacterium joostei strain DSM 16927]
ATGATACTGGATTTACTTTTCCCTAACCGATGCATTCATTGCAACAGAATCATCGAGCCTGATTTTTTGGTCTGCAACCT
TTGCTTCAACCAGATTCATTTTACCCATTATGATTATTTTGAGAGCAATCCTATTAAAGAAAAATGCAATCTCCTTTTCC
CTGTTGAAAACACCTATGCCTTAATCCGGTTTGAGGAAGAAAGCCTAAGCAGGAAAATCATTCATGAACTAAAATACAGA
AGCAGGGAAATAACCGGAAAAATATTAGCAGAATGGACCACTGAGCGTCTTGATTTCAAAAATCAGCGGCCTGATCTTAT
GGTAAGTGTACCACTTCATCCCAGAAAGCTAAGGGAAAGGGGTTACAACCAGCTCCATCTATTTACAGAAACTCTTTCAA
AGTTTTATAGCATTCCGTGTGATCATCAATTAATTAAAAGAAATCATTATTCTAAGGCTCAGGCTTTAAAGGACAAGCAA
CATCGTTTAGAAACAGTTAATCCATTTTCTATTACCCAACCCATCACAGGAAAGCACATTCTTTTGATTGATGATGTTTT
CACCACCGGAAATACCATTTCTTCTATTGCATGGGAAATTATAAATGTGGGAGATAATAAGGTGAGTATATTGGTGATAG
CGGTGGATGTTTGA
ATGATACTGGATTTACTTTTCCCTAACCGATGCATTCATTGCAACAGAATCATCGAGCCTGATTTTTTGGTCTGCAACCT
TTGCTTCAACCAGATTCATTTTACCCATTATGATTATTTTGAGAGCAATCCTATTAAAGAAAAATGCAATCTCCTTTTCC
CTGTTGAAAACACCTATGCCTTAATCCGGTTTGAGGAAGAAAGCCTAAGCAGGAAAATCATTCATGAACTAAAATACAGA
AGCAGGGAAATAACCGGAAAAATATTAGCAGAATGGACCACTGAGCGTCTTGATTTCAAAAATCAGCGGCCTGATCTTAT
GGTAAGTGTACCACTTCATCCCAGAAAGCTAAGGGAAAGGGGTTACAACCAGCTCCATCTATTTACAGAAACTCTTTCAA
AGTTTTATAGCATTCCGTGTGATCATCAATTAATTAAAAGAAATCATTATTCTAAGGCTCAGGCTTTAAAGGACAAGCAA
CATCGTTTAGAAACAGTTAATCCATTTTCTATTACCCAACCCATCACAGGAAAGCACATTCTTTTGATTGATGATGTTTT
CACCACCGGAAATACCATTTCTTCTATTGCATGGGAAATTATAAATGTGGGAGATAATAAGGTGAGTATATTGGTGATAG
CGGTGGATGTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
99.539 |
0.507 |