Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGY26_RS09030 Genome accession   NZ_CP033833
Coordinates   1831277..1832497 (+) Length   406 a.a.
NCBI ID   WP_058127988.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_571     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826277..1837497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY26_RS09010 (EGY26_08985) nadC 1827827..1828675 (+) 849 WP_003094645.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EGY26_RS09020 (EGY26_08995) - 1828879..1829343 (-) 465 WP_031630343.1 pilin -
  EGY26_RS09025 (EGY26_09000) pilB 1829573..1831273 (+) 1701 WP_003094647.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGY26_RS09030 (EGY26_09005) pilC 1831277..1832497 (+) 1221 WP_058127988.1 type II secretion system F family protein Machinery gene
  EGY26_RS09035 (EGY26_09010) pilD 1832501..1833373 (+) 873 WP_003094651.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  EGY26_RS09040 (EGY26_09015) coaE 1833370..1833981 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  EGY26_RS09045 (EGY26_09020) yacG 1833978..1834178 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  EGY26_RS09050 (EGY26_09025) - 1834215..1834424 (-) 210 WP_003094660.1 hypothetical protein -
  EGY26_RS09055 (EGY26_09030) - 1834530..1835219 (-) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  EGY26_RS09060 (EGY26_09035) - 1835216..1835686 (-) 471 WP_003094664.1 hypothetical protein -
  EGY26_RS09065 (EGY26_09040) - 1835683..1836108 (-) 426 WP_003094666.1 GNAT family N-acetyltransferase -
  EGY26_RS09070 (EGY26_09045) - 1836241..1836870 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  EGY26_RS09075 (EGY26_09050) - 1836867..1837316 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44048.90 Da        Isoelectric Point: 9.7193

>NTDB_id=326265 EGY26_RS09030 WP_058127988.1 1831277..1832497(+) (pilC) [Pseudomonas aeruginosa strain FDAARGOS_571]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEACDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=326265 EGY26_RS09030 WP_058127988.1 1831277..1832497(+) (pilC) [Pseudomonas aeruginosa strain FDAARGOS_571]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCAGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCTTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCTGCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAA
CTCGGCAACGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.519

99.754

0.783
  pilC Acinetobacter baylyi ADP1

60.784

100

0.611
  pilC Acinetobacter baumannii D1279779

60.149

99.507

0.599
  pilC Legionella pneumophila strain ERS1305867

54.04

97.537

0.527
  pilG Neisseria gonorrhoeae MS11

45.792

99.507

0.456
  pilG Neisseria meningitidis 44/76-A

45.274

99.015

0.448
  pilC Vibrio cholerae strain A1552

41.379

100

0.414
  pilC Vibrio campbellii strain DS40M4

40.547

99.015

0.401
  pilC Thermus thermophilus HB27

37.905

98.768

0.374

Multiple sequence alignment