Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EGX85_RS13090 Genome accession   NZ_CP033814
Coordinates   2630372..2630692 (+) Length   106 a.a.
NCBI ID   WP_011275670.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain FDAARGOS_517     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625372..2635692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX85_RS13060 (EGX85_13085) - 2626159..2626362 (+) 204 WP_011275664.1 YqgQ family protein -
  EGX85_RS13065 (EGX85_13090) - 2626359..2627345 (+) 987 WP_011275665.1 ROK family glucokinase -
  EGX85_RS13070 (EGX85_13095) - 2627345..2627668 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  EGX85_RS13075 (EGX85_13100) - 2627670..2628296 (+) 627 WP_011275667.1 MBL fold metallo-hydrolase -
  EGX85_RS13080 (EGX85_13105) comGA 2628348..2629322 (+) 975 WP_011275668.1 competence type IV pilus ATPase ComGA Machinery gene
  EGX85_RS13085 (EGX85_13110) comGB 2629294..2630358 (+) 1065 WP_011275669.1 competence type IV pilus assembly protein ComGB -
  EGX85_RS13090 (EGX85_13115) comGC 2630372..2630692 (+) 321 WP_011275670.1 competence type IV pilus major pilin ComGC Machinery gene
  EGX85_RS13095 (EGX85_13120) comGD 2630682..2631125 (+) 444 WP_016931110.1 competence type IV pilus minor pilin ComGD -
  EGX85_RS13100 (EGX85_13125) - 2631106..2631405 (+) 300 WP_011275672.1 hypothetical protein -
  EGX85_RS13115 (EGX85_13140) - 2631974..2632492 (+) 519 WP_011275674.1 shikimate kinase -
  EGX85_RS13120 (EGX85_13145) gcvT 2632681..2633772 (+) 1092 WP_033079984.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11782.84 Da        Isoelectric Point: 8.5328

>NTDB_id=326012 EGX85_RS13090 WP_011275670.1 2630372..2630692(+) (comGC) [Staphylococcus haemolyticus strain FDAARGOS_517]
MKNHFENLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=326012 EGX85_RS13090 WP_011275670.1 2630372..2630692(+) (comGC) [Staphylococcus haemolyticus strain FDAARGOS_517]
ATGAAGAATCACTTTGAAAATTTAAAAAAGTTAAAAGCCTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

83.333

96.226

0.802
  comGC Staphylococcus aureus MW2

83.333

96.226

0.802
  comYC Streptococcus gordonii str. Challis substr. CH1

45.192

98.113

0.443
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368

Multiple sequence alignment