Detailed information NTG0325835

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: EGX70_RS06955
• Genome accession: NZ_CP033808
• Coordinates: 1356303..1356716 (-)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus sp. FDAARGOS_522
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1351303..1361716

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGX70_RS06915 (EGX70_06915)	-	1351904..1352359 (-)	456	WP_000905673.1	hypothetical protein	-
EGX70_RS06920 (EGX70_06920)	-	1352400..1352537 (-)	138	WP_001865900.1	hypothetical protein	-
EGX70_RS06925 (EGX70_06925)	-	1352596..1352802 (-)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
EGX70_RS06930 (EGX70_06930)	-	1352954..1354147 (-)	1194	WP_000047534.1	acetate kinase	-
EGX70_RS06935 (EGX70_06935)	comYH	1354179..1355153 (-)	975	WP_123948044.1	class I SAM-dependent methyltransferase	Machinery gene
EGX70_RS06940 (EGX70_06940)	comGG	1355268..1355639 (-)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
EGX70_RS06945 (EGX70_06945)	comGF	1355617..1356078 (-)	462	WP_001878820.1	competence type IV pilus minor pilin ComGF	-
EGX70_RS06950 (EGX70_06950)	comGE	1356032..1356331 (-)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
EGX70_RS06955 (EGX70_06955)	comYD	1356303..1356716 (-)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
EGX70_RS06960 (EGX70_06960)	comGC/cglC	1356691..1357020 (-)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
EGX70_RS06965 (EGX70_06965)	comYB	1357017..1358060 (-)	1044	WP_301182249.1	competence type IV pilus assembly protein ComGB	Machinery gene
EGX70_RS06970 (EGX70_06970)	comYA	1357954..1358925 (-)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
EGX70_RS06980 (EGX70_06980)	-	1359098..1359463 (-)	366	WP_000285373.1	DUF1033 family protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=325835 EGX70_RS06955 WP_000244261.1 1356303..1356716(-) (comYD) [Streptococcus sp. FDAARGOS_522]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=325835 EGX70_RS06955 WP_000244261.1 1356303..1356716(-) (comYD) [Streptococcus sp. FDAARGOS_522]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394