Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DXF96_RS12540 Genome accession   NZ_CP033687
Coordinates   2643464..2644696 (+) Length   410 a.a.
NCBI ID   WP_142010250.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain DSM 2314     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2638464..2649696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXF96_RS12515 (DXF96_12885) - 2639588..2640310 (+) 723 WP_017551554.1 SDR family oxidoreductase -
  DXF96_RS12520 (DXF96_12890) - 2640494..2640754 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  DXF96_RS12525 (DXF96_12895) - 2640952..2641743 (+) 792 WP_014098506.1 DUF3388 domain-containing protein -
  DXF96_RS12530 (DXF96_12900) - 2641760..2642665 (+) 906 WP_110134298.1 RodZ family helix-turn-helix domain-containing protein -
  DXF96_RS12535 (DXF96_12905) pgsA 2642722..2643300 (+) 579 WP_110133963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DXF96_RS12540 (DXF96_12910) cinA 2643464..2644696 (+) 1233 WP_142010250.1 competence/damage-inducible protein A Machinery gene
  DXF96_RS12545 (DXF96_12915) recA 2644964..2646031 (+) 1068 WP_014098502.1 recombinase RecA Machinery gene
  DXF96_RS12550 (DXF96_12920) rny 2646514..2648076 (+) 1563 WP_014098501.1 ribonuclease Y -
  DXF96_RS12555 (DXF96_12925) - 2648163..2648963 (+) 801 WP_014098500.1 TIGR00282 family metallophosphoesterase -
  DXF96_RS12560 (DXF96_12930) spoVS 2649338..2649598 (+) 261 WP_014098499.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44924.61 Da        Isoelectric Point: 5.8783

>NTDB_id=324856 DXF96_RS12540 WP_142010250.1 2643464..2644696(+) (cinA) [Heyndrickxia coagulans strain DSM 2314]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIEKKLVTNEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSGNHYYMLLPGPPHELEPMF
IHYASPAIQEELETIEKIESRVLRFFGIGESQLETDIRHILDSQTNPTVAPLAKEGEVTLRITAKHQSAETANQMIDQVE
KEIMQIAGSYFYGYNDTTLMEALLEKLSKKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETATYLLELPGSRNNIRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=324856 DXF96_RS12540 WP_142010250.1 2643464..2644696(+) (cinA) [Heyndrickxia coagulans strain DSM 2314]
GTGAATGCCGAAATTATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAATGCCACATTTATTGCCGC
ACAATTGGCAGAGATCGGCGTGGATGTGTACTACCAGACCGTTGTCGGTGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GGACAGCGGAGGGTCGCGCCGATCTATTGATTTTTACGGGTGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCACATCGAAAAAAAACTGGTGACAAACGAAGATGCCATGCGCTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCACTGGTCATCGAAGGTTCAAAAGTGTTTCCGAATGACCACGGTATGG
CGCCGGGCATGCTGGCCAAAAGCGGAAACCACTATTATATGCTGCTGCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTACGCAAGCCCCGCGATCCAGGAAGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTCCTCCGCTTCTTCGG
GATCGGCGAATCCCAGCTGGAAACAGACATCCGCCATATACTGGACAGCCAAACCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTTAGGATTACGGCGAAACACCAGTCGGCGGAAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTATGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACATTAATGGAGGCCCTGCTCGAAAAGCT
TTCGAAAAAACAGCTGACGCTTGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACAATGTTGAAAGGCGGCGTTGTCGTCTATTCAAACGAAGCGAAGATGAAGCTCGCCAAAGTGAAAAAAGAA
ACGCTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGTAGCATTATGGATGCCGA
CATTGGCATCAGTTTTACAGGCGTGGCTGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CGATAAAAGGGAAAGAAACTGCCACTTATCTGTTGGAACTTCCCGGATCCCGCAACAACATCCGCACGCGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.108

99.512

0.568
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.471
  cinA Streptococcus mitis NCTC 12261

45.714

100

0.468
  cinA Streptococcus pneumoniae R6

45.694

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.466
  cinA Streptococcus pneumoniae D39

45.455

100

0.463
  cinA Streptococcus mitis SK321

48.825

93.415

0.456
  cinA Streptococcus mutans UA159

44.417

98.293

0.437
  cinA Streptococcus suis isolate S10

39.418

92.195

0.363

Multiple sequence alignment