Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D0856_RS15565 Genome accession   NZ_CP033144
Coordinates   3214147..3215256 (-) Length   369 a.a.
NCBI ID   WP_122068548.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3209147..3220256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS15535 (D0856_15535) hemF 3209675..3210592 (-) 918 WP_122068541.1 oxygen-dependent coproporphyrinogen oxidase -
  D0856_RS15540 (D0856_15540) - 3210627..3211184 (-) 558 WP_038896199.1 L-threonylcarbamoyladenylate synthase -
  D0856_RS15545 (D0856_15545) purE 3211385..3211870 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  D0856_RS15550 (D0856_15550) - 3211875..3213008 (+) 1134 WP_122068544.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  D0856_RS15555 (D0856_15555) - 3213073..3213642 (-) 570 WP_122068546.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  D0856_RS15560 (D0856_15560) - 3213665..3214144 (-) 480 WP_005429833.1 DUF494 family protein -
  D0856_RS15565 (D0856_15565) dprA 3214147..3215256 (-) 1110 WP_122068548.1 DNA-processing protein DprA Machinery gene
  D0856_RS15570 (D0856_15570) - 3215240..3216334 (-) 1095 WP_122068550.1 LysM peptidoglycan-binding domain-containing protein -
  D0856_RS15575 (D0856_15575) def 3216473..3216991 (+) 519 WP_033006323.1 peptide deformylase -
  D0856_RS15580 (D0856_15580) fmt 3217025..3217972 (+) 948 WP_038896195.1 methionyl-tRNA formyltransferase -
  D0856_RS15585 (D0856_15585) rsmB 3218055..3219338 (+) 1284 WP_122068552.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39370.13 Da        Isoelectric Point: 6.4971

>NTDB_id=321837 D0856_RS15565 WP_122068548.1 3214147..3215256(-) (dprA) [Vibrio owensii strain V180403]
MKPHNDTDLAAWLKLSCLPGIGGVKLSKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWLQVDKEVNACLTWAAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGDASCLSQPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVMENGALVSEFRPGAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=321837 D0856_RS15565 WP_122068548.1 3214147..3215256(-) (dprA) [Vibrio owensii strain V180403]
ATGAAACCACACAATGATACGGATCTCGCTGCCTGGCTAAAGCTGAGTTGTTTGCCAGGCATTGGCGGGGTCAAGCTGAG
TAAACTGCTGAGCAAAGATACGCCGAGTAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGTTTAACGGCGA
AACAACTGCAAGCGTGGTTGCAGGTCGATAAAGAAGTCAATGCTTGTCTGACTTGGGCTGCTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTATTATTCGTAAAGGG
AGACGCGAGCTGCTTGTCTCAGCCACAAATTGCCATGGTTGGCAGTCGTAATGCCAGTGTGGATGGACTACAACATGCAA
GAAGCTTTGCATCAGACTTGGTACAACACGATCTGATCGTCACTAGTGGTTTGGCATTAGGTATTGATGGTCATGCTCAT
GATGGCGCGCTATTAGCTGGAGGTAAAACCATCGCAGTGCTTGGTTCTGGGTTGGAACAAGTGTACCCAGCAAGACACCG
AGGTTTAGCGCAGCGAGTTATGGAAAATGGTGCGCTTGTTTCTGAGTTTCGTCCAGGTGCTAAGCCCCGCGCAGAAAACT
TCCCTCGTCGTAATCGAATTATTAGTGGTTTGTCGCTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGTTCCTTA
ATCACTGCTCGCTATGCCCTTGAGCAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCTCCTAACGCCAGTGG
TGGTAATCAATTGATTCGTAACGGGGCTTGCCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTACTCG
ACTGGTCTATTAATCAGAGTTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(307-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

95.935

100

0.959
  dprA Vibrio cholerae strain A1552

59.03

100

0.593
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.482
  dprA Legionella pneumophila strain ERS1305867

44.444

97.561

0.434
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis strain C311

36.761

100

0.388
  dprA Neisseria meningitidis MC58

36.761

100

0.388
  dprA Neisseria gonorrhoeae MS11

36.434

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.176

100

0.379

Multiple sequence alignment