Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0856_RS00375 Genome accession   NZ_CP033144
Coordinates   66422..67645 (-) Length   407 a.a.
NCBI ID   WP_122067015.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61422..72645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS00335 (D0856_00335) rpsP 61465..61713 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  D0856_RS00340 (D0856_00340) rimM 61744..62292 (+) 549 WP_005438038.1 ribosome maturation factor RimM -
  D0856_RS00345 (D0856_00345) trmD 62320..63063 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  D0856_RS00350 (D0856_00350) rplS 63105..63458 (+) 354 WP_005438036.1 50S ribosomal protein L19 -
  D0856_RS00355 (D0856_00355) yacG 63840..64040 (-) 201 WP_027726863.1 DNA gyrase inhibitor YacG -
  D0856_RS00360 (D0856_00360) zapD 64097..64837 (-) 741 WP_009707572.1 cell division protein ZapD -
  D0856_RS00365 (D0856_00365) coaE 64865..65479 (-) 615 WP_122067014.1 dephospho-CoA kinase -
  D0856_RS00370 (D0856_00370) pilD 65480..66349 (-) 870 WP_045413056.1 A24 family peptidase Machinery gene
  D0856_RS00375 (D0856_00375) pilC 66422..67645 (-) 1224 WP_122067015.1 type II secretion system F family protein Machinery gene
  D0856_RS00380 (D0856_00380) pilB 67679..69364 (-) 1686 WP_122067016.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0856_RS00385 (D0856_00385) - 69364..69831 (-) 468 WP_122067017.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D0856_RS00390 (D0856_00390) nadC 70096..70983 (-) 888 WP_122067018.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D0856_RS00395 (D0856_00395) ampD 71076..71627 (+) 552 WP_038896786.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44908.24 Da        Isoelectric Point: 10.3176

>NTDB_id=321818 D0856_RS00375 WP_122067015.1 66422..67645(-) (pilC) [Vibrio owensii strain V180403]
MKIITPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFVTKLSHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGS
KVISNRSDSFKLLLARSSLKIPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=321818 D0856_RS00375 WP_122067015.1 66422..67645(-) (pilC) [Vibrio owensii strain V180403]
ATGAAAATCATCACTCCTCAACTTAAGAACTACCGTTGGAAAGGCATCAATAGCTCGGGCAAAAAGACCTCAGGTAATGT
CCTCGCCATGACCGAAATTGAAGTGAGAGAACGCCTCGACGCGCAGCACATAAAAATCAAGAAGCTGAAAAAAGGCAGTA
TTTCTTTTGTCACCAAACTGAGCCACAGAGTCAAAGGTAAAGACATCACGGTGTTTACCCGCCAAATTGCTACCATGCTA
ATGACGGGTGTACCAATCGTTCAAGCACTTAAATTGGTTTCAGAGAATCATAAAAAAGCGGAAATGAAGTCGATTTTAAT
GAGTGTCACAAGGGCGGTAGAGGCTGGAACACCTATGTCGAAAGCCATGCGTACCGCTAGTACGCATTTTGACCCGCTTT
ATACCGATTTAATCGCAACGGGTGAGCAGTCTGGTAACTTATCCCAAGTCTTCGAGCGTTTGGCAACCTACAGGGAAAAA
AGCGAACAGTTGCGCGCGAAAGTAATCAAAGCACTGATTTATCCGGCCATGGTTGTCTTGGTTGCCTTAGGGGTTTCCTA
CCTAATGCTGACCCGGGTCATTCCTGAGTTTGAAAAAATGTTTGTCGGCTTTGGTGCGGATTTACCTGCTTTTACTCAGA
TGGTATTAGACCTCTCTGCTTGGACTCAGAACTGGGGCCCTTTCATTGGACTCGGTTTCTTGAGTCTCTTGATCGGCTCA
AAAGTCATATCGAACCGCTCTGATTCTTTCAAGCTATTGCTCGCTCGATCCAGTTTAAAGATTCCCATCTTGGGCCCTGT
TTTATCCAAAGCCGCCATTGCCAAGTTTAGTCGTACGCTTGCCACCAGTTTTAGTGCTGGCATCCCAATCCTCACCGCGT
TAAAAACCACCTCAAAAACCTCGGGTAACATGCACTATCAACTTGCAATAGAAGAGGTATACCGAGATACGGCTGCGGGT
ATGCCAATGTATATTGCGATGCGCAACTGCAATGTCTTCCCCGAGCTAGTATTGCAAATGGTCATGATTGGCGAAGAATC
TGGCCGCTTGGATGATATGCTCAACAAGATTGCAGCAATTTACGAGTTTGAAGTCGACAATACCGTCGATAACCTAAGTA
AGATTTTAGAGCCGCTGATCATCGTTTTTCTCGGTGTCGTGGTTGGCGGTTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

95.086

100

0.951
  pilC Vibrio cholerae strain A1552

74.25

98.28

0.73
  pilC Acinetobacter baylyi ADP1

42.04

98.771

0.415
  pilC Legionella pneumophila strain ERS1305867

40.447

99.017

0.4
  pilC Acinetobacter baumannii D1279779

40.75

98.28

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria meningitidis 44/76-A

39.655

99.754

0.396
  pilG Neisseria gonorrhoeae MS11

39.401

98.526

0.388

Multiple sequence alignment