Detailed information NTG0321817

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0856_RS00370
• Genome accession: NZ_CP033144
• Coordinates: 65480..66349 (-)
• Length: 289 a.a.
• NCBI ID: WP_045413056.1
• Uniprot ID: -
• Organism: Vibrio owensii strain V180403
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 60480..71349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0856_RS00335 (D0856_00335)	rpsP	61465..61713 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
D0856_RS00340 (D0856_00340)	rimM	61744..62292 (+)	549	WP_005438038.1	ribosome maturation factor RimM	-
D0856_RS00345 (D0856_00345)	trmD	62320..63063 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
D0856_RS00350 (D0856_00350)	rplS	63105..63458 (+)	354	WP_005438036.1	50S ribosomal protein L19	-
D0856_RS00355 (D0856_00355)	yacG	63840..64040 (-)	201	WP_027726863.1	DNA gyrase inhibitor YacG	-
D0856_RS00360 (D0856_00360)	zapD	64097..64837 (-)	741	WP_009707572.1	cell division protein ZapD	-
D0856_RS00365 (D0856_00365)	coaE	64865..65479 (-)	615	WP_122067014.1	dephospho-CoA kinase	-
D0856_RS00370 (D0856_00370)	pilD	65480..66349 (-)	870	WP_045413056.1	A24 family peptidase	Machinery gene
D0856_RS00375 (D0856_00375)	pilC	66422..67645 (-)	1224	WP_122067015.1	type II secretion system F family protein	Machinery gene
D0856_RS00380 (D0856_00380)	pilB	67679..69364 (-)	1686	WP_122067016.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0856_RS00385 (D0856_00385)	-	69364..69831 (-)	468	WP_122067017.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
D0856_RS00390 (D0856_00390)	nadC	70096..70983 (-)	888	WP_122067018.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32593.79 Da
• Isoelectric Point: 7.8754

>NTDB_id=321817 D0856_RS00370 WP_045413056.1 65480..66349(-) (pilD) [Vibrio owensii strain V180403]
MEVFQYYPWLFVVFATVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVSLQDSVIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=321817 D0856_RS00370 WP_045413056.1 65480..66349(-) (pilD) [Vibrio owensii strain V180403]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGGTTTTCGGTTTGATCGTGGGTAGTTTCCTCAA
CGTTGTAATTTATCGATTACCCAAAATAATGGAATTAGAATGGCGACGCGAATGCGCGGAATCATTCCCTGAATACAAAA
TAGAACCACCAAAAGAGAAACTGACATTAAGCGTACCACGCTCATCTTGTCAGCAATGTGGCACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGTTGCTTCTGCGCGGTAAATGTCACAACTGCCAATCTCCTATCAGTGCACGCTACCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACATTTATCGATCTCGATACTATGCTGTTGCCAGACCAGCTTACATTGCCA
TTAATGTGGGCAGGTATTGCGCTCGCGCTTTCTGGTATCAGTCCTGTGAGCCTACAAGATTCCGTCATTGGTGCAATGGC
AGGTTATCTGTGTCTTTGGAGTGTTTACTGGTTGTTTAAGCTCCTTACAGGCAAAGAAGGCATGGGTTATGGTGACTTTA
AACTCCTTGCCGCATTAGGTGCTTGGTTGGGTTGGCAATCGCTACCGATGATCATTCTGCTTTCATCAGTAGTGGGCGTC
ATCTTTGGTCTTATCCAACTGCGTTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCAATTGC
GGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	76.042	99.654	0.758
pilD	Acinetobacter baumannii D1279779	52.92	94.81	0.502
pilD	Acinetobacter nosocomialis M2	52.92	94.81	0.502
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443