Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   D0871_RS12560 Genome accession   NZ_CP033141
Coordinates   2508374..2508658 (-) Length   94 a.a.
NCBI ID   WP_023624118.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2507732..2517701 2508374..2508658 within 0


Gene organization within MGE regions


Location: 2507732..2517701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS12555 (D0871_12555) rrtA 2507732..2508283 (+) 552 WP_023624117.1 rhombosortase -
  D0871_RS12560 (D0871_12560) comEA 2508374..2508658 (-) 285 WP_023624118.1 ComEA family DNA-binding protein Machinery gene
  D0871_RS12565 (D0871_12565) ppiD 2508809..2510668 (-) 1860 WP_023624119.1 peptidylprolyl isomerase -
  D0871_RS12570 (D0871_12570) - 2510868..2511140 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  D0871_RS12575 (D0871_12575) lon 2511333..2513684 (-) 2352 WP_023624120.1 endopeptidase La -
  D0871_RS12580 (D0871_12580) clpX 2513816..2515096 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  D0871_RS12585 (D0871_12585) clpP 2515168..2515794 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D0871_RS12590 (D0871_12590) tig 2515900..2517204 (-) 1305 WP_029839990.1 trigger factor -
  D0871_RS26905 - 2517498..2517683 (-) 186 WP_005482581.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10205.90 Da        Isoelectric Point: 6.9786

>NTDB_id=321798 D0871_RS12560 WP_023624118.1 2508374..2508658(-) (comEA) [Vibrio parahaemolyticus strain 160807]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEARILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=321798 D0871_RS12560 WP_023624118.1 2508374..2508658(-) (comEA) [Vibrio parahaemolyticus strain 160807]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGCCCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

98.936

100

0.989
  comEA Vibrio campbellii strain DS40M4

76.842

100

0.777
  comEA Vibrio cholerae C6706

63.83

100

0.638
  comEA Vibrio cholerae strain A1552

63.83

100

0.638
  comE1/comEA Haemophilus influenzae Rd KW20

54.839

65.957

0.362
  comEA/comE1 Glaesserella parasuis strain SC1401

54.839

65.957

0.362
  comE Neisseria gonorrhoeae MS11

39.535

91.489

0.362
  comE Neisseria gonorrhoeae MS11

39.535

91.489

0.362
  comE Neisseria gonorrhoeae MS11

39.535

91.489

0.362
  comE Neisseria gonorrhoeae MS11

39.535

91.489

0.362

Multiple sequence alignment