Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D0812_RS17405 Genome accession   NZ_CP033137
Coordinates   3678213..3679322 (-) Length   369 a.a.
NCBI ID   WP_054824625.1    Uniprot ID   -
Organism   Vibrio owensii strain 1700302     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3673213..3684322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0812_RS17375 (D0812_17375) hemF 3673741..3674658 (-) 918 WP_054824622.1 oxygen-dependent coproporphyrinogen oxidase -
  D0812_RS17380 (D0812_17380) - 3674693..3675250 (-) 558 WP_054824623.1 L-threonylcarbamoyladenylate synthase -
  D0812_RS17385 (D0812_17385) purE 3675451..3675936 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  D0812_RS17390 (D0812_17390) - 3675941..3677074 (+) 1134 WP_054824624.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  D0812_RS17395 (D0812_17395) - 3677139..3677708 (-) 570 WP_009708006.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  D0812_RS17400 (D0812_17400) - 3677731..3678210 (-) 480 WP_005429833.1 DUF494 family protein -
  D0812_RS17405 (D0812_17405) dprA 3678213..3679322 (-) 1110 WP_054824625.1 DNA-processing protein DprA Machinery gene
  D0812_RS17410 (D0812_17410) - 3679306..3680400 (-) 1095 WP_054824626.1 LysM peptidoglycan-binding domain-containing protein -
  D0812_RS17415 (D0812_17415) def 3680539..3681057 (+) 519 WP_033006323.1 peptide deformylase -
  D0812_RS17420 (D0812_17420) fmt 3681091..3682038 (+) 948 WP_054824627.1 methionyl-tRNA formyltransferase -
  D0812_RS17425 (D0812_17425) rsmB 3682121..3683404 (+) 1284 WP_020196736.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39402.13 Da        Isoelectric Point: 6.4975

>NTDB_id=321759 D0812_RS17405 WP_054824625.1 3678213..3679322(-) (dprA) [Vibrio owensii strain 1700302]
MKPHNDTDLAAWLKLSCLPGIGGVKLSKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSKVDKEVDACLTWAAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGDASCLSQPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVMENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=321759 D0812_RS17405 WP_054824625.1 3678213..3679322(-) (dprA) [Vibrio owensii strain 1700302]
ATGAAACCACACAATGATACGGATCTCGCCGCCTGGTTAAAGCTGAGTTGCTTGCCAGGTATTGGTGGGGTCAAGCTGAG
TAAGCTACTGAGCAAAGACACGCCGAGTAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGTTTAACGGCGA
AACAACTGCAAGCGTGGTCGAAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGCTGCTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTATTATTCGTAAAGGG
AGACGCGAGCTGCTTGTCTCAGCCACAAATAGCCATGGTTGGCAGTCGTAATGCCAGCGTGGATGGACTACAACATGCAA
GAAGCTTTGCATCAGACTTGGTACAACACGATCTGATCGTCACCAGTGGTTTAGCATTAGGTATTGATGGTCATGCTCAT
GATGGCGCGCTTTTAGCTGGCGGTAAAACCATCGCAGTGCTTGGTTCTGGGTTGGAACAAGTGTACCCAGCAAGACACCG
AGGTTTAGCGCAGCGAGTGATGGAAAATGGTGCGCTTGTCTCTGAGTTTCGTCCTAATGCTAAACCTCGCGCAGAAAACT
TCCCACGTCGTAATCGAATTATCAGTGGTTTGTCGCTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGTTCCTTA
ATCACTGCTCGCTATGCCCTTGAGCAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCTCCTAACGCCAGTGG
TGGTAATCAATTGATTCGTAACGGGGCTTGCCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTACTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

96.206

100

0.962
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.485
  dprA Haemophilus influenzae Rd KW20

45.294

92.141

0.417
  dprA Legionella pneumophila strain ERS1305867

46.201

89.16

0.412
  dprA Neisseria meningitidis strain C311

36.504

100

0.385
  dprA Neisseria meningitidis MC58

36.504

100

0.385
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.377

Multiple sequence alignment