Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0784_RS13405 Genome accession   NZ_CP033134
Coordinates   2866584..2867807 (+) Length   407 a.a.
NCBI ID   WP_012128878.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2861584..2872807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS13380 (D0784_13375) ampD 2862618..2863169 (-) 552 WP_122020019.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D0784_RS13385 (D0784_13380) nadC 2863262..2864149 (+) 888 WP_077262200.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D0784_RS13395 (D0784_13390) - 2864414..2864851 (+) 438 WP_122020021.1 type IV pilin protein -
  D0784_RS13400 (D0784_13395) pilB 2864864..2866549 (+) 1686 WP_038891992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0784_RS13405 (D0784_13400) pilC 2866584..2867807 (+) 1224 WP_012128878.1 type II secretion system F family protein Machinery gene
  D0784_RS13410 (D0784_13405) pilD 2867880..2868749 (+) 870 WP_012128879.1 prepilin peptidase Machinery gene
  D0784_RS13415 (D0784_13410) coaE 2868750..2869364 (+) 615 WP_045369833.1 dephospho-CoA kinase -
  D0784_RS13420 (D0784_13415) zapD 2869392..2870132 (+) 741 WP_012128881.1 cell division protein ZapD -
  D0784_RS13425 (D0784_13420) yacG 2870195..2870389 (+) 195 WP_009707573.1 DNA gyrase inhibitor YacG -
  D0784_RS13435 (D0784_13430) rplS 2870848..2871201 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  D0784_RS13440 (D0784_13435) trmD 2871243..2871986 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  D0784_RS13445 (D0784_13440) rimM 2872014..2872562 (-) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44957.21 Da        Isoelectric Point: 10.3971

>NTDB_id=321694 D0784_RS13405 WP_012128878.1 2866584..2867807(+) (pilC) [Vibrio campbellii strain 170502]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=321694 D0784_RS13405 WP_012128878.1 2866584..2867807(+) (pilC) [Vibrio campbellii strain 170502]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGGAACGT
GCTCGCCATGACCGAAATAGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAACAGTCCGGAAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTCATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCCGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTAACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAGCCATTGATCATCGTCTTTCTTGGCGTGGTCGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.509

100

0.995
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Acinetobacter baumannii D1279779

40.695

99.017

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilC Legionella pneumophila strain ERS1305867

39.356

99.263

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment