Detailed information NTG0321695

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0784_RS13410
• Genome accession: NZ_CP033134
• Coordinates: 2867880..2868749 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain 170502
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2862880..2873749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0784_RS13385 (D0784_13380)	nadC	2863262..2864149 (+)	888	WP_077262200.1	carboxylating nicotinate-nucleotide diphosphorylase	-
D0784_RS13395 (D0784_13390)	-	2864414..2864851 (+)	438	WP_122020021.1	type IV pilin protein	-
D0784_RS13400 (D0784_13395)	pilB	2864864..2866549 (+)	1686	WP_038891992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0784_RS13405 (D0784_13400)	pilC	2866584..2867807 (+)	1224	WP_012128878.1	type II secretion system F family protein	Machinery gene
D0784_RS13410 (D0784_13405)	pilD	2867880..2868749 (+)	870	WP_012128879.1	prepilin peptidase	Machinery gene
D0784_RS13415 (D0784_13410)	coaE	2868750..2869364 (+)	615	WP_045369833.1	dephospho-CoA kinase	-
D0784_RS13420 (D0784_13415)	zapD	2869392..2870132 (+)	741	WP_012128881.1	cell division protein ZapD	-
D0784_RS13425 (D0784_13420)	yacG	2870195..2870389 (+)	195	WP_009707573.1	DNA gyrase inhibitor YacG	-
D0784_RS13435 (D0784_13430)	rplS	2870848..2871201 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
D0784_RS13440 (D0784_13435)	trmD	2871243..2871986 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
D0784_RS13445 (D0784_13440)	rimM	2872014..2872562 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
D0784_RS13450 (D0784_13445)	rpsP	2872590..2872838 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=321695 D0784_RS13410 WP_012128879.1 2867880..2868749(+) (pilD) [Vibrio campbellii strain 170502]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=321695 D0784_RS13410 WP_012128879.1 2867880..2868749(+) (pilD) [Vibrio campbellii strain 170502]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGATTTTA
AACTCCTTGCTGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439