Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4L20_RS01145 Genome accession   NZ_CP032899
Coordinates   232605..233348 (+) Length   247 a.a.
NCBI ID   WP_139549228.1    Uniprot ID   -
Organism   Helicobacter pylori strain 478-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227605..238348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS01120 panD 229754..230107 (+) 354 WP_079342783.1 aspartate 1-decarboxylase -
  D4L20_RS01125 - 230110..230412 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4L20_RS01130 - 230412..231416 (+) 1005 WP_139549226.1 PDZ domain-containing protein -
  D4L20_RS01135 comB6 231424..232479 (+) 1056 WP_139549227.1 P-type conjugative transfer protein TrbL Machinery gene
  D4L20_RS01140 comB7 232495..232608 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4L20_RS01145 comB8 232605..233348 (+) 744 WP_139549228.1 virB8 family protein Machinery gene
  D4L20_RS01150 comB9 233348..234337 (+) 990 WP_139549229.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4L20_RS01155 comB10 234330..235460 (+) 1131 WP_139549230.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L20_RS01160 - 235531..236943 (+) 1413 WP_139549231.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4L20_RS01165 gmd 236973..238118 (+) 1146 WP_139549232.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28780.00 Da        Isoelectric Point: 8.9604

>NTDB_id=320059 D4L20_RS01145 WP_139549228.1 232605..233348(+) (comB8) [Helicobacter pylori strain 478-A-EK1]
MKEKPFNSEQLIYLEELLSHQEKHLENRLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=320059 D4L20_RS01145 WP_139549228.1 232605..233348(+) (comB8) [Helicobacter pylori strain 478-A-EK1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAGGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGACAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAACTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAC
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment