Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | D4L20_RS01140 | Genome accession | NZ_CP032899 |
| Coordinates | 232495..232608 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain 478-A-EK1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 227495..237608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L20_RS01115 | - | 227539..229764 (+) | 2226 | WP_139549225.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| D4L20_RS01120 | panD | 229754..230107 (+) | 354 | WP_079342783.1 | aspartate 1-decarboxylase | - |
| D4L20_RS01125 | - | 230110..230412 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D4L20_RS01130 | - | 230412..231416 (+) | 1005 | WP_139549226.1 | PDZ domain-containing protein | - |
| D4L20_RS01135 | comB6 | 231424..232479 (+) | 1056 | WP_139549227.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D4L20_RS01140 | comB7 | 232495..232608 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D4L20_RS01145 | comB8 | 232605..233348 (+) | 744 | WP_139549228.1 | virB8 family protein | Machinery gene |
| D4L20_RS01150 | comB9 | 233348..234337 (+) | 990 | WP_139549229.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D4L20_RS01155 | comB10 | 234330..235460 (+) | 1131 | WP_139549230.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D4L20_RS01160 | - | 235531..236943 (+) | 1413 | WP_139549231.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=320058 D4L20_RS01140 WP_001217873.1 232495..232608(+) (comB7) [Helicobacter pylori strain 478-A-EK1]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=320058 D4L20_RS01140 WP_001217873.1 232495..232608(+) (comB7) [Helicobacter pylori strain 478-A-EK1]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |