Detailed information NTG0320057

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4L20_RS01135
• Genome accession: NZ_CP032899
• Coordinates: 231424..232479 (+)
• Length: 351 a.a.
• NCBI ID: WP_139549227.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 478-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 226424..237479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L20_RS01105	-	226820..227233 (+)	414	WP_139549224.1	universal stress protein	-
D4L20_RS01110	-	227264..227539 (+)	276	WP_024112669.1	ATP-dependent Clp protease adaptor ClpS	-
D4L20_RS01115	-	227539..229764 (+)	2226	WP_139549225.1	ATP-dependent Clp protease ATP-binding subunit	-
D4L20_RS01120	panD	229754..230107 (+)	354	WP_079342783.1	aspartate 1-decarboxylase	-
D4L20_RS01125	-	230110..230412 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4L20_RS01130	-	230412..231416 (+)	1005	WP_139549226.1	PDZ domain-containing protein	-
D4L20_RS01135	comB6	231424..232479 (+)	1056	WP_139549227.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L20_RS01140	comB7	232495..232608 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L20_RS01145	comB8	232605..233348 (+)	744	WP_139549228.1	virB8 family protein	Machinery gene
D4L20_RS01150	comB9	233348..234337 (+)	990	WP_139549229.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L20_RS01155	comB10	234330..235460 (+)	1131	WP_139549230.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L20_RS01160	-	235531..236943 (+)	1413	WP_139549231.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39732.76 Da
• Isoelectric Point: 9.0413

>NTDB_id=320057 D4L20_RS01135 WP_139549227.1 231424..232479(+) (comB6) [Helicobacter pylori strain 478-A-EK1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQVLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSISKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320057 D4L20_RS01135 WP_139549227.1 231424..232479(+) (comB6) [Helicobacter pylori strain 478-A-EK1]
ATGAAACATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGTGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCTTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCATTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952