Detailed information NTG0320061

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4L20_RS01155
• Genome accession: NZ_CP032899
• Coordinates: 234330..235460 (+)
• Length: 376 a.a.
• NCBI ID: WP_139549230.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 478-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 229330..240460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L20_RS01120	panD	229754..230107 (+)	354	WP_079342783.1	aspartate 1-decarboxylase	-
D4L20_RS01125	-	230110..230412 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4L20_RS01130	-	230412..231416 (+)	1005	WP_139549226.1	PDZ domain-containing protein	-
D4L20_RS01135	comB6	231424..232479 (+)	1056	WP_139549227.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L20_RS01140	comB7	232495..232608 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L20_RS01145	comB8	232605..233348 (+)	744	WP_139549228.1	virB8 family protein	Machinery gene
D4L20_RS01150	comB9	233348..234337 (+)	990	WP_139549229.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L20_RS01155	comB10	234330..235460 (+)	1131	WP_139549230.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L20_RS01160	-	235531..236943 (+)	1413	WP_139549231.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L20_RS01165	gmd	236973..238118 (+)	1146	WP_139549232.1	GDP-mannose 4,6-dehydratase	-
D4L20_RS01170	-	238111..239043 (+)	933	WP_120972097.1	GDP-L-fucose synthase	-
D4L20_RS08405	-	239071..239289 (-)	219	Protein_221	anthranilate synthase component I	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41841.34 Da
• Isoelectric Point: 9.8333

>NTDB_id=320061 D4L20_RS01155 WP_139549230.1 234330..235460(+) (comB10) [Helicobacter pylori strain 478-A-EK1]
MNKWLKGAIVLVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDPKITPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=320061 D4L20_RS01155 WP_139549230.1 234330..235460(+) (comB10) [Helicobacter pylori strain 478-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTCTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAGACTTTTACTAGCCCTCCCATAGATCCAAAAAT
AACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCCTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTTACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCTTTATTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCTATTGTGGTGATTAG
AGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.872	100	0.979