Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LMHCC_RS06015 Genome accession   NC_011660
Coordinates   1214195..1215439 (-) Length   414 a.a.
NCBI ID   WP_012581343.1    Uniprot ID   A0A0E0UWJ7
Organism   Listeria monocytogenes HCC23     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1209195..1220439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMHCC_RS05990 (LMHCC_1167) - 1209215..1209577 (-) 363 WP_003721907.1 YlbF family regulator -
  LMHCC_RS05995 (LMHCC_1168) - 1209594..1210397 (-) 804 WP_012581342.1 TIGR00282 family metallophosphoesterase -
  LMHCC_RS06000 (LMHCC_1169) - 1210402..1210899 (-) 498 WP_003736573.1 GNAT family N-acetyltransferase -
  LMHCC_RS06005 (LMHCC_1170) rny 1211013..1212575 (-) 1563 WP_003738907.1 ribonuclease Y -
  LMHCC_RS06010 (LMHCC_1171) recA 1212876..1213922 (-) 1047 WP_003725961.1 recombinase RecA Machinery gene
  LMHCC_RS06015 (LMHCC_1172) cinA 1214195..1215439 (-) 1245 WP_012581343.1 competence/damage-inducible protein A Machinery gene
  LMHCC_RS06020 - 1215740..1216066 (+) 327 WP_041176513.1 hypothetical protein -
  LMHCC_RS06025 (LMHCC_1173) pgsA 1216223..1216801 (-) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LMHCC_RS06030 (LMHCC_1174) - 1216892..1217821 (-) 930 WP_003730599.1 RodZ family helix-turn-helix domain-containing protein -
  LMHCC_RS06035 (LMHCC_1175) - 1217872..1218603 (-) 732 WP_012581344.1 SDR family oxidoreductase -
  LMHCC_RS06040 (LMHCC_1176) - 1218695..1219981 (-) 1287 WP_012581345.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45619.78 Da        Isoelectric Point: 4.6526

>NTDB_id=31972 LMHCC_RS06015 WP_012581343.1 1214195..1215439(-) (cinA) [Listeria monocytogenes HCC23]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRAMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=31972 LMHCC_RS06015 WP_012581343.1 1214195..1215439(-) (cinA) [Listeria monocytogenes HCC23]
ATGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCGGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGGCTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACCTATG
CTGGTGATAATGAAGTCGTGGTTCGCATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGATACC
GAAGAAGAAATATTGCGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGT
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UWJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.1

98.792

0.505
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus mitis NCTC 12261

48.926

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.493
  cinA Streptococcus pneumoniae R6

48.571

100

0.493
  cinA Streptococcus pneumoniae D39

48.333

100

0.49
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment