Detailed information NTG0318512

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: CFBP6623_RS04845
• Genome accession: NZ_CP039903
• Coordinates: 959690..960322 (+)
• Length: 210 a.a.
• NCBI ID: WP_046800320.1
• Uniprot ID: A0A1S7PKM4
• Organism: Agrobacterium tumefaciens strain CFBP6623
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 954690..965322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP6623_RS04820 (CFBP6623_04820)	-	955093..955434 (+)	342	WP_046800325.1	cupin domain-containing protein	-
CFBP6623_RS04825 (CFBP6623_04825)	-	955455..955769 (-)	315	WP_046800324.1	helix-turn-helix domain-containing protein	-
CFBP6623_RS04830 (CFBP6623_04830)	-	955872..956630 (+)	759	WP_046800323.1	SDR family oxidoreductase	-
CFBP6623_RS04835 (CFBP6623_04835)	-	956651..957898 (-)	1248	WP_062653876.1	cytochrome P450	-
CFBP6623_RS04840 (CFBP6623_04840)	-	957988..959235 (-)	1248	WP_046800321.1	GGDEF domain-containing protein	-
CFBP6623_RS04845 (CFBP6623_04845)	clpP	959690..960322 (+)	633	WP_046800320.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CFBP6623_RS04850 (CFBP6623_04850)	clpX	960615..961892 (+)	1278	WP_003521528.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CFBP6623_RS04855 (CFBP6623_04855)	-	962090..962458 (+)	369	WP_046800319.1	glyoxalase/bleomycin resistance/dioxygenase family protein	-
CFBP6623_RS04865 (CFBP6623_04865)	lon	962841..965258 (+)	2418	WP_046800318.1	endopeptidase La	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 23271.80 Da
• Isoelectric Point: 6.1177

>NTDB_id=318512 CFBP6623_RS04845 WP_046800320.1 959690..960322(+) (clpP) [Agrobacterium tumefaciens strain CFBP6623]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAQNWGVIDKILTSRQEMEGAAAN

Nucleotide

• Length: 633 bp

>NTDB_id=318512 CFBP6623_RS04845 WP_046800320.1 959690..960322(+) (clpP) [Agrobacterium tumefaciens strain CFBP6623]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTATGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGTCCGGTGGAAGACCAGATGGCTTCGCTCGTCTGCG
CACAGCTGCTTTTCCTCGAGGCTGAGAACCCGAAGAAGGAAATCGCGCTTTACATCAATTCGCCAGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATTCGCCCGGCTGTCTCAACGCTCTGCGTTGGTCAGGCCGCATCGAT
GGGTTCGCTGCTTCTGGCTGCCGGTGAAAAGGGAATGCGCTTTGCAACCCCGAACGCCCGCATCATGGTGCACCAGCCTT
CCGGCGGTTTCCAGGGACAGGCATCGGATATCGAGCGTCACGCCCGTGACATCATCAAGATGAAGCGTCGCCTGAATGAA
GTCTACGTGAAGCATACCGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCGGACGA
AGCGCAGAATTGGGGTGTGATCGACAAGATCCTCACCTCGCGCCAGGAAATGGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (21-200)

3D structure

• AlphaFold DB: A0A1S7PKM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.383	89.524	0.505
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448