Detailed information NTG0318513

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: CFBP6623_RS04850
• Genome accession: NZ_CP039903
• Coordinates: 960615..961892 (+)
• Length: 425 a.a.
• NCBI ID: WP_003521528.1
• Uniprot ID: A0A1S7PKG6
• Organism: Agrobacterium tumefaciens strain CFBP6623
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 955615..966892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP6623_RS04830 (CFBP6623_04830)	-	955872..956630 (+)	759	WP_046800323.1	SDR family oxidoreductase	-
CFBP6623_RS04835 (CFBP6623_04835)	-	956651..957898 (-)	1248	WP_062653876.1	cytochrome P450	-
CFBP6623_RS04840 (CFBP6623_04840)	-	957988..959235 (-)	1248	WP_046800321.1	GGDEF domain-containing protein	-
CFBP6623_RS04845 (CFBP6623_04845)	clpP	959690..960322 (+)	633	WP_046800320.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CFBP6623_RS04850 (CFBP6623_04850)	clpX	960615..961892 (+)	1278	WP_003521528.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CFBP6623_RS04855 (CFBP6623_04855)	-	962090..962458 (+)	369	WP_046800319.1	glyoxalase/bleomycin resistance/dioxygenase family protein	-
CFBP6623_RS04865 (CFBP6623_04865)	lon	962841..965258 (+)	2418	WP_046800318.1	endopeptidase La	-
CFBP6623_RS04870 (CFBP6623_04870)	hupB	965546..965821 (+)	276	WP_003496481.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46897.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=318513 CFBP6623_RS04850 WP_003521528.1 960615..961892(+) (clpX) [Agrobacterium tumefaciens strain CFBP6623]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=318513 CFBP6623_RS04850 WP_003521528.1 960615..961892(+) (clpX) [Agrobacterium tumefaciens strain CFBP6623]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGGCCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACATCTATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGATATCATCAAGATTCTCGACGAATATGTC
ATCGGTCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTGGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCGACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGCGGTATCGTCTATATCGACGA
GGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACTAACATCCTGTTCATCTGCGGCGGCGCCTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGCGAAAAGAC
CTCGATCGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGTGTGGGCGAGGTGCTGCGCGAGCTGGAGCCGGAAG
ATCTGGTGAAGTTCGGCCTCATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAAGACCTGGATGAAGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCACTTCGCGAAATCGCCCGCAAGGCGATTACCCGCAAGACCGGCGCCCGTGGTCTGCGCT
CGATCATGGAAAAGATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAT
GACGTTGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGCCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A1S7PKG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.907	93.882	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525