Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D8N35_RS03705 Genome accession   NZ_CP032739
Coordinates   749856..751094 (-) Length   412 a.a.
NCBI ID   WP_121260442.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EC-369     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744856..756094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8N35_RS03685 (D8N35_03685) pgmB 745174..745824 (+) 651 WP_121260440.1 beta-phosphoglucomutase -
  D8N35_RS03690 (D8N35_03690) treR 745879..746595 (+) 717 WP_005226457.1 trehalose operon repressor -
  D8N35_RS03695 (D8N35_03695) rny 746893..748467 (-) 1575 WP_005232891.1 ribonuclease Y -
  D8N35_RS03700 (D8N35_03700) recA 748710..749753 (-) 1044 WP_005226448.1 recombinase RecA Machinery gene
  D8N35_RS03705 (D8N35_03705) cinA 749856..751094 (-) 1239 WP_121260442.1 competence/damage-inducible protein A Machinery gene
  D8N35_RS03710 (D8N35_03710) pgsA 751222..751803 (-) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D8N35_RS03715 (D8N35_03715) - 751936..752838 (-) 903 WP_121260444.1 helix-turn-helix domain-containing protein -
  D8N35_RS03720 (D8N35_03720) yfmH 753302..754600 (-) 1299 WP_121260446.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  D8N35_RS03725 (D8N35_03725) yfmF 754593..755861 (-) 1269 WP_121260448.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44770.87 Da        Isoelectric Point: 4.6005

>NTDB_id=318400 D8N35_RS03705 WP_121260442.1 749856..751094(-) (cinA) [Enterococcus casseliflavus strain EC-369]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEEQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVGLLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=318400 D8N35_RS03705 WP_121260442.1 749856..751094(-) (cinA) [Enterococcus casseliflavus strain EC-369]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTAGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTACTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGCCATGTGGGACAGGAATTAGTGCGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCGGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACTCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGAGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGGGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCAGAGAC
CGATTATGCGGTGGCGTTTACGGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

42.995

100

0.432

Multiple sequence alignment