Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SWP_RS21145 Genome accession   NC_011566
Coordinates   4991776..4993041 (+) Length   421 a.a.
NCBI ID   WP_020914723.1    Uniprot ID   -
Organism   Shewanella piezotolerans WP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4986776..4998041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SWP_RS21130 (swp_4756) nadC 4987118..4988002 (+) 885 WP_020914717.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SWP_RS24855 - 4989515..4989614 (+) 100 Protein_4154 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SWP_RS21140 (swp_4761) pilB 4990025..4991731 (+) 1707 WP_020914722.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SWP_RS21145 (swp_4762) pilC 4991776..4993041 (+) 1266 WP_020914723.1 type II secretion system F family protein Machinery gene
  SWP_RS21150 (swp_4763) pilD 4993095..4994006 (+) 912 WP_020914724.1 prepilin peptidase Machinery gene
  SWP_RS21155 (swp_4764) coaE 4994236..4994841 (+) 606 WP_020914725.1 dephospho-CoA kinase -
  SWP_RS21160 (swp_4765) zapD 4994850..4995584 (+) 735 WP_020914726.1 cell division protein ZapD -
  SWP_RS21165 (swp_4766) yacG 4995633..4995869 (+) 237 WP_020914727.1 DNA gyrase inhibitor YacG -
  SWP_RS21170 (swp_4767) mutT 4995866..4996261 (+) 396 WP_020914728.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45871.07 Da        Isoelectric Point: 10.2777

>NTDB_id=31814 SWP_RS21145 WP_020914723.1 4991776..4993041(+) (pilC) [Shewanella piezotolerans WP3]
MATASSQLSKKRGAQKSQPKVVTYSWKGVNRDGRRTSGELRGVSSAEIRAQLKAQGVIPKNVRKKSAPLFKSEKKIKPMD
IAMVTRQVATMLAAGVPIVTTLELLGKGHEKPKMRELLATIVNDVQSGIPLSEALRPHRLYFDELYVDLVAAGEHSGSLD
AVFDRIATYREKSEALKSKIKKAMFYPASVVIVAVIVTALLLLFVVPQFETIFQGFGAELPAFTQIVVNLSRWLQSSWYI
FVIAIIAAVWGFRRAHRNSQLFRDKIDEIILKIPLIGEILHKGAMAKFARTLATTFAAGVPLIDGLESAAGASGNAVYKK
AVLNIRTEVMSGMQMNVAMRTTGLFPDMMIQMVMIGEESGSLDSMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTVV
GGLIVAMYLPIFQLGNVVGGG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=31814 SWP_RS21145 WP_020914723.1 4991776..4993041(+) (pilC) [Shewanella piezotolerans WP3]
ATGGCTACAGCAAGCAGTCAATTATCAAAAAAGAGAGGCGCGCAAAAAAGCCAGCCAAAAGTTGTCACATACTCCTGGAA
AGGGGTTAACCGCGATGGCCGTCGCACCTCCGGCGAACTTAGAGGAGTGTCTAGCGCTGAAATTAGGGCGCAACTGAAAG
CCCAAGGCGTCATCCCCAAAAATGTTCGCAAAAAGTCTGCACCACTGTTTAAATCTGAGAAAAAAATCAAGCCCATGGAT
ATCGCCATGGTTACCCGCCAGGTAGCTACCATGTTGGCTGCTGGCGTGCCAATTGTAACTACTCTTGAGTTACTCGGGAA
AGGCCATGAGAAGCCTAAAATGCGCGAGTTGTTAGCAACTATCGTCAATGATGTGCAATCAGGCATTCCATTGTCAGAGG
CGCTTCGTCCCCACAGACTCTACTTTGATGAACTGTATGTTGACTTAGTGGCCGCAGGTGAGCACTCCGGCAGTCTAGAT
GCAGTATTTGATCGTATTGCCACCTACCGTGAAAAATCAGAAGCGCTTAAATCAAAAATCAAAAAGGCGATGTTTTATCC
AGCTTCAGTAGTTATTGTTGCTGTTATTGTAACTGCCTTATTACTGCTCTTTGTTGTACCGCAGTTTGAAACTATATTTC
AGGGCTTTGGTGCCGAATTGCCTGCTTTTACTCAAATTGTCGTCAACTTATCTCGTTGGCTTCAATCCTCTTGGTATATT
TTTGTTATAGCCATTATTGCTGCTGTTTGGGGCTTTAGGCGAGCGCACCGTAACTCTCAGCTATTTCGCGATAAAATTGA
TGAAATTATCTTAAAGATCCCTTTAATTGGTGAAATTTTACATAAAGGCGCCATGGCAAAATTTGCCCGCACCTTAGCAA
CCACCTTTGCCGCGGGTGTGCCACTGATTGATGGCTTAGAGTCTGCCGCCGGCGCCTCAGGTAATGCAGTGTATAAAAAA
GCTGTACTGAATATTCGCACCGAAGTGATGTCGGGCATGCAGATGAATGTCGCTATGCGCACCACAGGACTGTTTCCTGA
TATGATGATCCAGATGGTGATGATTGGTGAAGAATCAGGCTCATTGGATAGCATGCTCAACAAAGTGGCCAATATTTACG
AAATGCAGGTGGATGACGCAGTAGATGGCTTATCAAGCCTAATTGAACCTATTATGATGGTAGTTATTGGCACTGTAGTT
GGTGGCCTTATTGTAGCTATGTACTTACCGATTTTCCAATTAGGTAATGTAGTGGGCGGAGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.815

96.2

0.527
  pilC Acinetobacter baylyi ADP1

50.735

96.912

0.492
  pilC Legionella pneumophila strain ERS1305867

49.877

96.2

0.48
  pilC Acinetobacter baumannii D1279779

50.754

94.537

0.48
  pilC Vibrio cholerae strain A1552

50

94.537

0.473
  pilC Vibrio campbellii strain DS40M4

46.154

95.724

0.442
  pilG Neisseria gonorrhoeae MS11

44.648

90.974

0.406
  pilG Neisseria meningitidis 44/76-A

44.386

90.974

0.404

Multiple sequence alignment