Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D7385_RS07085 Genome accession   NZ_CP032670
Coordinates   1361562..1362806 (+) Length   414 a.a.
NCBI ID   WP_150874007.1    Uniprot ID   -
Organism   Listeria monocytogenes strain 52860     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1356562..1367806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7385_RS07060 (D7385_07075) yfmH 1357019..1358305 (+) 1287 WP_012581345.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  D7385_RS07065 (D7385_07080) ymfI 1358398..1359129 (+) 732 WP_003730600.1 elongation factor P 5-aminopentanone reductase -
  D7385_RS07070 (D7385_07085) - 1359179..1360108 (+) 930 WP_003730599.1 helix-turn-helix domain-containing protein -
  D7385_RS07075 (D7385_07090) pgsA 1360199..1360777 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D7385_RS07080 (D7385_07095) - 1360934..1361260 (-) 327 WP_041176513.1 hypothetical protein -
  D7385_RS07085 (D7385_07100) cinA 1361562..1362806 (+) 1245 WP_150874007.1 competence/damage-inducible protein A Machinery gene
  D7385_RS07090 (D7385_07105) recA 1363079..1364125 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  D7385_RS07095 (D7385_07110) rny 1364426..1365988 (+) 1563 WP_003738907.1 ribonuclease Y -
  D7385_RS07100 (D7385_07115) - 1366102..1366599 (+) 498 WP_070763533.1 GNAT family N-acetyltransferase -
  D7385_RS07105 (D7385_07120) - 1366604..1367407 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  D7385_RS07110 (D7385_07125) - 1367424..1367786 (+) 363 WP_003721907.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45605.77 Da        Isoelectric Point: 4.6526

>NTDB_id=317953 D7385_RS07085 WP_150874007.1 1361562..1362806(+) (cinA) [Listeria monocytogenes strain 52860]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGCETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQYLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=317953 D7385_RS07085 WP_150874007.1 1361562..1362806(+) (cinA) [Listeria monocytogenes strain 52860]
ATGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCGGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGGCTTGTAAAGGATACC
GAGGAAGAAATATTGCGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGC
TAAGCGTTAAAGGTTGTGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGGCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATATTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.498
  cinA Streptococcus mitis SK321

48.804

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.687

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment