Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D7I46_RS00650 Genome accession   NZ_CP032627
Coordinates   125324..125923 (-) Length   199 a.a.
NCBI ID   WP_120771114.1    Uniprot ID   A0A514Z8G9
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 120324..130923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS00640 (D7I46_00640) acnA 121480..124026 (+) 2547 WP_120771113.1 aconitate hydratase AcnA -
  D7I46_RS00645 (D7I46_00645) icd 124049..125286 (+) 1238 Protein_110 NADP-dependent isocitrate dehydrogenase -
  D7I46_RS00650 (D7I46_00650) clpP 125324..125923 (-) 600 WP_120771114.1 ATP-dependent Clp protease proteolytic subunit Regulator
  D7I46_RS00655 (D7I46_00655) - 126198..126728 (+) 531 WP_162930919.1 hypothetical protein -
  D7I46_RS00660 (D7I46_00660) spx 127068..127466 (+) 399 WP_120771115.1 transcriptional regulator Spx -
  D7I46_RS00665 (D7I46_00665) - 127695..128474 (+) 780 WP_120773244.1 TatD family hydrolase -
  D7I46_RS00670 (D7I46_00670) - 128783..129421 (+) 639 WP_120771116.1 FMN-dependent NADH-azoreductase -
  D7I46_RS00675 (D7I46_00675) - 129730..130227 (+) 498 WP_120771117.1 transcriptional regulator -
  D7I46_RS00680 (D7I46_00680) - 130252..130545 (+) 294 WP_120771118.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22037.14 Da        Isoelectric Point: 4.7505

>NTDB_id=317290 D7I46_RS00650 WP_120771114.1 125324..125923(-) (clpP) [Lactococcus allomyrinae strain 1JSPR-7]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNSPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDIQIIADSIKKTRDRLERILSEN
SGKPIEQIHKDTERDHWMDAKETLDYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=317290 D7I46_RS00650 WP_120771114.1 125324..125923(-) (clpP) [Lactococcus allomyrinae strain 1JSPR-7]
ATGGGTTATTTAGTACCTACTGTTATTGAACAATCTAGTCGTGGCGAACGCGCTTATGATATCTACTCAAGACTTCTGAA
AGACCGCATCATTATGCTGACAGGTCCCGTTGAAGATGGAATGGCAAACAGTATTATTGCACAGCTCCTCTTTCTTGATG
CACAAGATAACACGAAAGACATCTATCTTTATGTTAACAGCCCTGGTGGCTCTGTATCAGCTGGTCTTGCTATTGTTGAC
ACAATGAATTTCATTAAATCTGATGTTCAAACCATCGTCATGGGTATGGCTGCTTCAATGGGAACAATCATTGCATCAAG
TGGTACAAAAGGCAAACGCTTCATGTTGCCAAATGCAGAATATTTGATTCACCAACCAATGGGTGGTGCTGGACAAGGTA
CTCAACAAACAGATATTCAAATTATTGCTGACAGTATTAAAAAGACACGTGACCGCCTAGAGCGTATTCTCTCTGAAAAC
TCAGGAAAACCTATTGAGCAAATTCATAAAGATACAGAACGCGACCACTGGATGGACGCCAAAGAAACTTTAGACTATGG
TTTCATTGATGAAATTATGGAAAACAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514Z8G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

90.955

100

0.91
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

90.452

100

0.905
  clpP Streptococcus mutans UA159

85.204

98.492

0.839
  clpP Streptococcus pyogenes JRS4

83.163

98.492

0.819
  clpP Streptococcus pyogenes MGAS315

83.163

98.492

0.819
  clpP Streptococcus thermophilus LMG 18311

82.653

98.492

0.814
  clpP Streptococcus thermophilus LMD-9

82.653

98.492

0.814
  clpP Streptococcus pneumoniae Rx1

80.513

97.99

0.789
  clpP Streptococcus pneumoniae D39

80.513

97.99

0.789
  clpP Streptococcus pneumoniae R6

80.513

97.99

0.789
  clpP Streptococcus pneumoniae TIGR4

80.513

97.99

0.789
  clpP Bacillus subtilis subsp. subtilis str. 168

60

95.477

0.573
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.513

96.985

0.558

Multiple sequence alignment