Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D50_RS00945 Genome accession   NZ_CP032620
Coordinates   168902..170887 (-) Length   661 a.a.
NCBI ID   WP_120701232.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 163902..175887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS00925 (D7D50_00925) amiF 164400..165323 (-) 924 WP_120701229.1 ATP-binding cassette domain-containing protein Regulator
  D7D50_RS00930 (D7D50_00930) amiE 165333..166400 (-) 1068 WP_120701230.1 ABC transporter ATP-binding protein Regulator
  D7D50_RS00935 (D7D50_00935) amiD 166412..167338 (-) 927 WP_117745255.1 oligopeptide ABC transporter permease OppC Regulator
  D7D50_RS00940 (D7D50_00940) amiC 167338..168837 (-) 1500 WP_120701231.1 ABC transporter permease Regulator
  D7D50_RS00945 (D7D50_00945) amiA3 168902..170887 (-) 1986 WP_120701232.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS00950 (D7D50_00950) amiA3 171079..173043 (-) 1965 WP_120701233.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS00955 (D7D50_00955) pbp3 173217..174458 (+) 1242 WP_120701234.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  D7D50_RS00965 (D7D50_00965) - 174680..175252 (-) 573 WP_120701235.1 hypothetical protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72741.74 Da        Isoelectric Point: 4.9317

>NTDB_id=317111 D7D50_RS00945 WP_120701232.1 168902..170887(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYNDDPTTLDYTVSSKASVHDITTNGVDGLLANDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSETLPLVQGSVKGLKDYVDGKITDFS
QVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLMPINGEFLESKGDNFGQPGDVKSILFNGPFLLKSITSKSEITFEKNED
YWDKDNVHIDKIKLSYYDGSDQDSLARGFSDGSYTVARLFPASSNFASVEKKYKDNIYNTQPGAGVAVFGFNIDRQAYNH
TSKTSDEQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKEYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADSQDGLYNKDKAKAQFEKAKAELQKEGVQFPIHLDVPVVQSSTNFVARMQSFKQSVEDTLGTENVVVDLQMMDQ
DAILNITINVPSAADADWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFSGGVDNASAKAVGLDEYAKLLDDAGK
ETQDVVARYEKYAAAQAWLTDSSLVIPTMTSSGAATVVSKVVPFSGPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQAREK
WLKEKADSNKKAQEELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=317111 D7D50_RS00945 WP_120701232.1 168902..170887(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACGTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACATATGGCTATGTTTATAACGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCTTCCGTTCACGACATTACAACTAACGGTGTAGATGGTTTGTTGGCAAACGACAAATACGGAAACCTT
GTACCATCTATTGCTGAGGATTGGTCTGTTTCAAAAGACGGCTTGACCTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCTGATGGTGAAGAGCATGGTGAAGTAACAGCTCATGACTTCGTCACTGGCTTGAAGCATGCGGCAGACAAGA
AATCAGAAACTCTTCCGTTAGTTCAAGGTTCAGTTAAAGGATTGAAAGACTATGTAGATGGAAAAATCACTGATTTTTCT
CAAGTTGGGGTAAAAGCGGTAGATGACTACACACTTGAATATACCTTGAATCAACCAGAAACTTTCTGGAATTCTAAAAC
AACCAATGGGGTGCTCATGCCAATCAATGGTGAATTCTTGGAAAGCAAGGGTGACAATTTTGGTCAGCCAGGTGATGTCA
AATCAATCTTATTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATTACTTTTGAGAAGAACGAAGAC
TATTGGGACAAAGACAACGTTCATATCGACAAGATTAAATTGTCTTATTATGACGGATCAGATCAAGATTCCTTGGCGCG
TGGTTTTAGCGATGGATCGTACACAGTTGCTCGACTCTTCCCAGCAAGCTCAAACTTTGCTTCTGTAGAAAAGAAATACA
AAGACAACATCTACAACACACAACCTGGAGCTGGTGTAGCAGTCTTTGGTTTCAATATTGACCGTCAAGCTTACAACCAT
ACTTCTAAAACATCAGATGAGCAGAAATCTTCTACGAAGAAAGCTATCTTGAACAAGAATTTCCGTCAAGCTATCACCTT
TGCCTTGAACCGCGAAAATTATTCAGCGCAAGTCAATGGTAAAGAATATGCTAAGGCTGCTATTCGAAATATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTCGGTGATGTTGTAGCTGATAAGTTGCAGACATATGGAGATCAATGG
AGTGGTGTAAATCTTGCAGATAGCCAAGATGGTCTTTACAACAAAGATAAAGCAAAAGCTCAGTTCGAAAAAGCAAAAGC
AGAACTCCAAAAAGAAGGCGTTCAATTCCCAATCCACTTGGATGTTCCAGTTGTTCAAAGTTCAACAAACTTTGTAGCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGATACACTTGGAACAGAAAATGTTGTGGTGGACCTTCAAATGATGGACCAA
GATGCTATCTTGAATATCACTATTAACGTACCATCTGCAGCGGATGCTGACTGGGATCTTCAAGGGCTTGTAGGCTGGAA
TCCAGACTATGATGACCCATCAACTTATCTTGATACTTTGCAACCATCTTCTCCTGACCAGACCAAAACTTACCTTGGAT
TTTCTGGTGGTGTAGATAATGCCTCTGCTAAGGCTGTTGGCTTAGATGAATATGCGAAATTGCTTGATGATGCAGGAAAA
GAAACCCAAGATGTGGTTGCACGTTATGAAAAATACGCAGCAGCGCAAGCTTGGTTAACGGATAGTTCGTTAGTAATTCC
AACTATGACAAGCTCAGGAGCAGCTACAGTAGTTTCAAAAGTGGTACCATTCTCTGGACCTTCATCACAAACAGGTAATA
AAGGTTCAACTTATTTCAAATATGTTGAAGTTCAGGACGAACCGGTTACTAAAAAACAATATGATCAAGCACGTGAAAAA
TGGTTGAAAGAAAAAGCTGATTCAAACAAAAAAGCTCAGGAAGAACTAGAAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.879

100

0.601
  amiA Streptococcus salivarius strain HSISS4

59.517

100

0.596
  amiA3 Streptococcus thermophilus LMG 18311

59.427

100

0.596

Multiple sequence alignment