Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   D7D50_RS00930 Genome accession   NZ_CP032620
Coordinates   165333..166400 (-) Length   355 a.a.
NCBI ID   WP_120701230.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 160333..171400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS00925 (D7D50_00925) amiF 164400..165323 (-) 924 WP_120701229.1 ATP-binding cassette domain-containing protein Regulator
  D7D50_RS00930 (D7D50_00930) amiE 165333..166400 (-) 1068 WP_120701230.1 ABC transporter ATP-binding protein Regulator
  D7D50_RS00935 (D7D50_00935) amiD 166412..167338 (-) 927 WP_117745255.1 oligopeptide ABC transporter permease OppC Regulator
  D7D50_RS00940 (D7D50_00940) amiC 167338..168837 (-) 1500 WP_120701231.1 ABC transporter permease Regulator
  D7D50_RS00945 (D7D50_00945) amiA3 168902..170887 (-) 1986 WP_120701232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39734.41 Da        Isoelectric Point: 4.7597

>NTDB_id=317108 D7D50_RS00930 WP_120701230.1 165333..166400(-) (amiE) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MTNDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEENGRIANGTINYRGQEL
TELKSNKDWEEIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSKGDLYSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFKVSDTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTIKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=317108 D7D50_RS00930 WP_120701230.1 165333..166400(-) (amiE) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGACAAATGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
TATTCGCAATGTCTCTTTGGATCTTGTTGAAGGAGAGGTCATGGCGCTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTT
TGACAAAAACTTTTACAGGAATGTTAGAAGAAAACGGACGAATTGCCAATGGGACCATTAATTATCGCGGGCAAGAATTA
ACAGAACTCAAGTCAAACAAAGATTGGGAAGAAATTCGTGGTGCAAAAATTGCAACGATCTTCCAAGACCCAATGACCAG
TTTGGACCCGATTAATACAATCGGATCACAAATTACAGAGGTTATTATTAAACACCAAGGCAAGAGTGCCAAAGAAGCCA
GAGAAATGGCTATTGACTATATGGAAAAGGTGGGAATCCCGGAAGCGGAACGTCGCTTTGATGAATATCCTTTCCAATAT
TCAGGTGGGATGCGCCAACGGATCGTTATTGCTATTGCGCTTGCTTGCCGTCCTGATATCTTGATCTGTGACGAGCCTAC
AACGGCCCTCGACGTAACTATTCAAGCCCAAATCATTGACTTGTTGAAATCATTACAAAAAGAATATAACTTTACAACAA
TATTTATCACCCATGATTTGGGTGTGGTGGCAAGTATTGCAGATAAGGTTGCCGTAATGTATGCTGGTGAAATTGTAGAA
TTTGGTAAAGTAGAAGAAATTTTCTATGACCCAAGACATCCTTATACATGGAGTCTTCTTTCAAGTTTGCCACAGTTGTC
TACTTCTAAAGGTGATTTATATTCTATCCCAGGGACTCCTCCATCATTGTACTCACCGGTAAAAGGGGATGCCTTTGCTT
TGCGCTCAGACTATGCCATGCAAATTGATTTTGAGGAACATCCACCAGTTTTCAAAGTTTCAGATACACATTGGGCTAAA
ACGTGGCTCTTGCATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTTCATGAAAAAATAAGTGCGAA
AATGGGATTCACTACAATCAAGGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

84.225

100

0.842
  amiE Streptococcus thermophilus LMG 18311

82.535

100

0.825
  amiE Streptococcus thermophilus LMD-9

82.535

100

0.825
  oppD Streptococcus mutans UA159

56.522

97.183

0.549

Multiple sequence alignment