Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   D7D50_RS00935 Genome accession   NZ_CP032620
Coordinates   166412..167338 (-) Length   308 a.a.
NCBI ID   WP_117745255.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 161412..172338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS00925 (D7D50_00925) amiF 164400..165323 (-) 924 WP_120701229.1 ATP-binding cassette domain-containing protein Regulator
  D7D50_RS00930 (D7D50_00930) amiE 165333..166400 (-) 1068 WP_120701230.1 ABC transporter ATP-binding protein Regulator
  D7D50_RS00935 (D7D50_00935) amiD 166412..167338 (-) 927 WP_117745255.1 oligopeptide ABC transporter permease OppC Regulator
  D7D50_RS00940 (D7D50_00940) amiC 167338..168837 (-) 1500 WP_120701231.1 ABC transporter permease Regulator
  D7D50_RS00945 (D7D50_00945) amiA3 168902..170887 (-) 1986 WP_120701232.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34518.44 Da        Isoelectric Point: 9.7758

>NTDB_id=317109 D7D50_RS00935 WP_117745255.1 166412..167338(-) (amiD) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MSTIDKKKFQFVERDDFASETIDAPSYSYWKSVFRQFFKKKSTILMLAVLVAILLMSFVYPMFSNFDYNDVSKVNDFTAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATLINVVIGVVIGGIWGVSKSIDRFMMEVYNVISNVPFMLIVIV
LTYSIGAGFWNLILAMTVTGWIGIAYSIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTTTTQLLPAFIS
TEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLVLVSLSFYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=317109 D7D50_RS00935 WP_117745255.1 166412..167338(-) (amiD) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGTCTACAATCGATAAGAAGAAATTCCAATTTGTGGAACGTGATGATTTTGCCTCTGAGACAATTGATGCGCCGTCTTA
CTCCTATTGGAAGTCCGTATTCCGTCAATTCTTCAAAAAGAAATCAACCATTTTGATGTTAGCCGTTTTGGTTGCTATTC
TCTTAATGAGTTTTGTATACCCAATGTTTTCAAACTTTGATTACAATGATGTAAGTAAAGTAAATGACTTCACTGCCCGT
TTGAATCCTCCAAGTGCCAAAGCCTTCTTCGGTACGGATAACAATGGTAAATCCTTGTTTGATGGAGTCTGGTTTGGTGC
CCGCAATTCGATTATCATCTCCTTTATTGCTACCTTGATCAACGTTGTGATTGGAGTAGTGATCGGCGGGATTTGGGGTG
TGTCAAAATCAATCGACCGCTTCATGATGGAAGTTTATAACGTTATTTCAAATGTTCCATTCATGTTGATTGTTATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAACTTGATTTTGGCGATGACAGTGACAGGATGGATTGGGATTGCTTACTC
TATCCGTGTCCAAATTATGCGTTACCGCGATTTAGAGTACAACTTGGCCAGTCGCACCTTGGGTACACCAACCCTTAAAA
TTGTGACGAAAAATATTTTGCCACAGTTGGTTTCTGTTATTGTGACGACAACTACACAATTGTTGCCAGCCTTTATTTCG
ACTGAGGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCGATTACAGTTCCAAGTTTAGGTCGTCTTATTTCAGACTACTC
ACAAAACGTAACAACCAATGCGTATCTTTTCTGGATTCCATTGACAGTCTTAGTCTTGGTATCCTTGTCATTCTATATCG
TTGGACAAAACCTTGCAGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.922

100

0.779
  amiD Streptococcus thermophilus LMG 18311

76.623

100

0.766
  amiD Streptococcus thermophilus LMD-9

76.623

100

0.766

Multiple sequence alignment