Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D50_RS00950 Genome accession   NZ_CP032620
Coordinates   171079..173043 (-) Length   654 a.a.
NCBI ID   WP_120701233.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 166079..178043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS00935 (D7D50_00935) amiD 166412..167338 (-) 927 WP_117745255.1 oligopeptide ABC transporter permease OppC Regulator
  D7D50_RS00940 (D7D50_00940) amiC 167338..168837 (-) 1500 WP_120701231.1 ABC transporter permease Regulator
  D7D50_RS00945 (D7D50_00945) amiA3 168902..170887 (-) 1986 WP_120701232.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS00950 (D7D50_00950) amiA3 171079..173043 (-) 1965 WP_120701233.1 peptide ABC transporter substrate-binding protein Regulator
  D7D50_RS00955 (D7D50_00955) pbp3 173217..174458 (+) 1242 WP_120701234.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  D7D50_RS00965 (D7D50_00965) - 174680..175252 (-) 573 WP_120701235.1 hypothetical protein -
  D7D50_RS00970 (D7D50_00970) sufB 175270..176682 (-) 1413 WP_023022212.1 Fe-S cluster assembly protein SufB -
  D7D50_RS00975 (D7D50_00975) sufU 176827..177261 (-) 435 WP_023022211.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72672.73 Da        Isoelectric Point: 4.8074

>NTDB_id=317112 D7D50_RS00950 WP_120701233.1 171079..173043(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVEAKSEGLFLIQNSIKGLDAFVKGETKDFNTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNKAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDHVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKSVKKKFGDNIVYGVQYGTSYYLAFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVEFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFSNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAIPAVDFGKYAELLKDANAEVNDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=317112 D7D50_RS00950 WP_120701233.1 171079..173043(-) (amiA3) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTTTAGCCAGTGCTCTTCTATTGACAGCCTGTGGCGGTGGAAG
CAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACTTTGGACTACATTGCCTCGACTCGTACAACAA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACTGTTTCGGAAGATGGCTTGGTGTATACCTATAAACTTCGAAAAGATGCAAAATGGTATACCAGTGAGGGAGA
AGAGTATGGTGCTGTAACAGCCCAGGACTTTGTGACAGGTATCAAACACGCTGTGGAAGCAAAATCTGAGGGTCTTTTCT
TAATCCAAAATTCGATTAAAGGCTTAGATGCATTTGTCAAAGGTGAAACAAAAGATTTCAATACAGTTGGCGTGAAAGCC
CTAGATGATTATACCGTTCAATATACCTTGGAACGTCCAGAAAGTTTTTGGAATTCTAAGACGACCTCAGGCGTCCTCTT
CCCGGTTAACAAAGCTTTCTTAGAATCTCAAGGGAAAGACTTCGGTTCTTTGAAGCCAAGTAGTATTCTCTATAATGGTC
CTTATTATTTGAAGAATTTAACTTCAAAATCACAGATTGAACTTGTGAAAAACAAGGAATATTATGATGAAAAGAATGTT
CATATTGATCATGTGAAGTTGACCTATAATGACGGATCAGATCCAGAATCTGTCATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCCACTTATAAGAGTGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATACGGAACATCATACTACCTCGCATTCAACATTGATCGTCAGAAGTATAACCATACAGCCAAAACAACAGATGCT
CAAAAATCGTCCACAAAACAAGCGATTTTAAACAAAGACTTCCGTCAAGCTGTAAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCGGGAGCAGATGCGGCGACCAAGATTCTTCGGAATACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGAGAAGAGTTCGGTAAGGTTGTTGAGAAACAATTGGTGACCTATGGAGATGAGTGGAAAGATGTAAATCTAGATGAT
GCCCAAACCACTCTCTACAATCAAGAAAAAGCCAAAGCTGAGTTTGCAAAAGCTAAAGAACAATTGCAAAAAGAAGGGGT
AGAATTCCCAATTCATTTGGATTATGTTGTCAGTCAGACGGACAACAGTCAGGTACAACAAGCTAGCTCCTTTAAACAAT
CCGTAGAAGCTGTTCTCGGTGCAGACAATGTTGTTGTAGATATTCAGAAATTATCTGATGATGACTTTAGCAATATTACC
TACTTTACAGATACTGCTGCTGAGAAAGATTATGACCTTGCAGGCGGAGGATGGGTGCCAGACTACCAAGATCCATCTAC
TTATTTAGAGAGTTTAAGTCCTGTTAACGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGCTCAAACAGTCCCGCTA
TTCCAGCAGTTGACTTTGGGAAGTATGCAGAACTCTTAAAAGATGCCAATGCTGAAGTGAATGATCAAGCTGTACGCTAT
GAGAAATACGCAGCTGCTCAAGCATGGCTAACCGATAGTTCATTGATCTTGCCGACTGTTTCAAATGGTGGAACTCCAAT
GTTGCAACGGACTGTTCCATATAGTCGTGCGGCTTCATGGGTTGGAACAAAAGGAACTGGAACCAACTATAAATATCTTG
AACTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGCAAAGAAAAATGGTTAAAAGAAAAGGCTGAATCCAAT
AAAAAAGCTCAAGAAGAATTAAAGAACCACATCGAATCGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.333

100

0.538
  amiA3 Streptococcus thermophilus LMG 18311

52.879

100

0.534
  amiA Streptococcus salivarius strain HSISS4

52.807

100

0.532

Multiple sequence alignment