Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VSAL_RS00500 Genome accession   NC_011312
Coordinates   80351..81460 (+) Length   369 a.a.
NCBI ID   WP_012548973.1    Uniprot ID   -
Organism   Aliivibrio salmonicida LFI1238     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 75351..86460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSAL_RS23155 (VSAL_I0073) rsmB 76303..77583 (-) 1281 WP_044583361.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VSAL_RS00485 (VSAL_I0074) fmt 77686..78633 (-) 948 WP_023604459.1 methionyl-tRNA formyltransferase -
  VSAL_RS00490 (VSAL_I0075) def 78654..79163 (-) 510 WP_012548971.1 peptide deformylase -
  VSAL_RS00495 (VSAL_I0076) - 79281..80342 (+) 1062 WP_012548972.1 LysM peptidoglycan-binding domain-containing protein -
  VSAL_RS00500 (VSAL_I0077) dprA 80351..81460 (+) 1110 WP_012548973.1 DNA-processing protein DprA Machinery gene
  VSAL_RS00505 (VSAL_I0078) - 81463..81936 (+) 474 WP_012548974.1 DUF494 family protein -
  VSAL_RS00510 (VSAL_I0079) - 81946..82515 (+) 570 WP_012548975.1 type I DNA topoisomerase -
  VSAL_RS00515 (VSAL_I0080) - 82555..83670 (-) 1116 WP_085941829.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VSAL_RS00520 (VSAL_I0081) purE 83673..84158 (-) 486 WP_044583150.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VSAL_RS00525 (VSAL_I0082) - 84360..84917 (+) 558 WP_012548978.1 Sua5/YciO/YrdC/YwlC family protein -
  VSAL_RS00530 (VSAL_I0083) aroE 84984..85805 (+) 822 WP_012548979.1 shikimate dehydrogenase -
  VSAL_RS00535 (VSAL_I0084) - 85813..86064 (+) 252 WP_049940313.1 DUF1488 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39932.82 Da        Isoelectric Point: 6.3392

>NTDB_id=31638 VSAL_RS00500 WP_012548973.1 80351..81460(+) (dprA) [Aliivibrio salmonicida LFI1238]
MFNSDKHLSAWLTLCFCPRIGGKVMSRLLAIDSVENIVKYDKDKLQSIGLSCAQIAYIQAVNHEEVDKCLLWEDGDSLNT
ILTLSDPRYPKLLSEISAPPPVLFVKGDVLALSEPQVAIVGSRNASLEGLECAKQFAASIVQHNYVVTSGLALGVDGYAH
HGAIEAKGQTIAVLGSGLNKVYPAKHRTLADRVIHNGALVSEFRPDSPPRADNFPRRNRIISGLSTGVLVVEAAERSGSL
ITARYANEQGREVFALPGSIHNPTAQGSNSLIKAGAKLVSSPEDIFEEIGALTYCAISHQPSLFEQEVVTEQLPFPKVFA
TVGIEATPVDIIAERCQTPVHEIMMQLLELELQGFITAVPGGYIKKRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=31638 VSAL_RS00500 WP_012548973.1 80351..81460(+) (dprA) [Aliivibrio salmonicida LFI1238]
ATGTTTAACTCAGATAAACACTTATCTGCATGGTTAACTCTGTGCTTTTGTCCTCGAATTGGTGGGAAGGTAATGTCTCG
CCTACTTGCCATTGATTCTGTTGAAAATATTGTAAAGTACGATAAGGATAAATTGCAATCGATAGGGCTTTCTTGTGCGC
AAATTGCTTACATCCAGGCTGTGAATCATGAAGAAGTAGATAAATGCTTATTGTGGGAAGATGGAGATTCTCTTAATACC
ATTTTAACGTTATCTGATCCTCGCTATCCGAAGTTATTATCTGAAATAAGCGCCCCGCCGCCAGTATTATTTGTTAAAGG
TGATGTTTTGGCGCTATCTGAACCTCAAGTGGCTATTGTCGGTAGCCGTAATGCTAGCCTAGAAGGTTTAGAATGTGCGA
AGCAATTTGCGGCTTCCATTGTGCAGCATAATTATGTCGTTACTAGTGGTTTAGCTCTAGGGGTTGATGGATACGCCCAT
CATGGGGCGATTGAAGCGAAAGGACAAACTATTGCAGTACTTGGTTCTGGGTTAAACAAGGTATATCCAGCAAAACACAG
AACGCTGGCTGATCGTGTGATTCATAATGGGGCTTTAGTTTCTGAGTTTAGGCCAGATTCTCCCCCACGAGCGGACAATT
TTCCTCGTCGAAATCGCATTATTAGTGGGTTATCTACCGGGGTACTCGTTGTGGAAGCGGCTGAACGTTCTGGTTCTTTG
ATTACTGCAAGGTATGCGAATGAGCAAGGGCGAGAAGTGTTTGCTTTACCGGGATCAATACATAACCCTACAGCTCAAGG
TTCTAATTCTTTAATTAAAGCCGGTGCAAAGCTGGTTTCGTCACCGGAAGACATTTTTGAAGAGATCGGAGCATTAACCT
ATTGTGCAATCTCTCATCAACCTTCGCTTTTTGAGCAAGAAGTTGTCACAGAACAATTGCCATTTCCCAAAGTGTTCGCT
ACCGTAGGCATAGAGGCGACGCCTGTTGATATAATAGCAGAGCGATGTCAGACGCCTGTACATGAAATCATGATGCAATT
ACTTGAATTAGAGTTGCAAGGTTTCATCACTGCAGTCCCAGGGGGTTACATTAAAAAGCGGAGGGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(80-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

58.743

99.187

0.583
  dprA Vibrio cholerae strain A1552

55.014

100

0.55
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.474
  dprA Legionella pneumophila strain ERS1305867

43.103

94.309

0.406
  dprA Haemophilus influenzae Rd KW20

42.73

91.328

0.39
  dprA Neisseria meningitidis strain C311

36.923

100

0.39
  dprA Neisseria meningitidis MC58

36.923

100

0.39
  dprA Neisseria gonorrhoeae MS11

36.598

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

36.34

100

0.382

Multiple sequence alignment