Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLW34_RS10810 Genome accession   NZ_CP032430
Coordinates   2078402..2078791 (-) Length   129 a.a.
NCBI ID   WP_021211455.1    Uniprot ID   -
Organism   Lactococcus cremoris strain W34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2070287..2078607 2078402..2078791 flank -205


Gene organization within MGE regions


Location: 2070287..2078791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLW34_RS10770 (LLW34_2099) ricT 2070471..2071253 (-) 783 WP_011834464.1 stage 0 sporulation family protein -
  LLW34_RS10775 (LLW34_2100) - 2071303..2072163 (-) 861 WP_011675470.1 DNA polymerase III subunit delta' -
  LLW34_RS10780 (LLW34_2101) tmk 2072296..2072931 (-) 636 WP_015082045.1 dTMP kinase -
  LLW34_RS10785 (LLW34_2102) yycF 2073109..2073810 (+) 702 WP_003131580.1 response regulator YycF -
  LLW34_RS10790 (LLW34_2103) - 2073803..2075230 (+) 1428 WP_011675468.1 cell wall metabolism sensor histidine kinase WalK -
  LLW34_RS10795 (LLW34_2104) - 2075420..2076232 (+) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLW34_RS10800 (LLW34_2105) groL 2076284..2077912 (-) 1629 WP_011675465.1 chaperonin GroEL -
  LLW34_RS10805 (LLW34_2106) groES 2077999..2078283 (-) 285 WP_011675464.1 co-chaperone GroES -
  LLW34_RS10810 (LLW34_2107) ssbB 2078402..2078791 (-) 390 WP_021211455.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14677.73 Da        Isoelectric Point: 6.4793

>NTDB_id=315825 LLW34_RS10810 WP_021211455.1 2078402..2078791(-) (ssbB) [Lactococcus cremoris strain W34]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRENAVNFEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=315825 LLW34_RS10810 WP_021211455.1 2078402..2078791(-) (ssbB) [Lactococcus cremoris strain W34]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAACGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

96.124

100

0.961
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558

Multiple sequence alignment