Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D3X10_RS11275 Genome accession   NZ_CP032415
Coordinates   2333361..2334623 (+) Length   420 a.a.
NCBI ID   WP_117200238.1    Uniprot ID   -
Organism   Shewanella algae strain VGH117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2328361..2339623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3X10_RS11255 (D3X10_11310) ampD 2328571..2329149 (-) 579 WP_051541442.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D3X10_RS11260 (D3X10_11315) nadC 2329308..2330168 (+) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D3X10_RS11265 (D3X10_11325) - 2331036..2331476 (+) 441 WP_117200240.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D3X10_RS11270 (D3X10_11330) pilB 2331498..2333204 (+) 1707 WP_117200239.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D3X10_RS11275 (D3X10_11335) pilC 2333361..2334623 (+) 1263 WP_117200238.1 type II secretion system F family protein Machinery gene
  D3X10_RS11280 (D3X10_11340) pilD 2334693..2335607 (+) 915 WP_117200237.1 A24 family peptidase Machinery gene
  D3X10_RS11285 (D3X10_11345) coaE 2335608..2336219 (+) 612 WP_117200236.1 dephospho-CoA kinase -
  D3X10_RS11290 (D3X10_11350) zapD 2336216..2336956 (+) 741 WP_028779562.1 cell division protein ZapD -
  D3X10_RS11295 (D3X10_11355) yacG 2337001..2337213 (+) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  D3X10_RS11300 (D3X10_11360) mutT 2337213..2337611 (+) 399 WP_117200235.1 8-oxo-dGTP diphosphatase MutT -
  D3X10_RS11305 (D3X10_11365) - 2337682..2337945 (+) 264 Protein_2030 transposase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46012.23 Da        Isoelectric Point: 10.2168

>NTDB_id=315624 D3X10_RS11275 WP_117200238.1 2333361..2334623(+) (pilC) [Shewanella algae strain VGH117]
MATATAKDNKTKNKNAKAQPKIHTFTWKGLNRDGKQSSGELRGTSITEIKTLLKSQGINPKLVRKKSASLFGGDKKIKPM
DIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRTLLGTVLTDVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFASFGAELPAFTQFIVNVSRWLQSTWY
LFLAAIVIAIWLFIRAHRNSEHFRNRIDEMVLKIPLIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVYR
KALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPVMMVVIGTL
VGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=315624 D3X10_RS11275 WP_117200238.1 2333361..2334623(+) (pilC) [Shewanella algae strain VGH117]
ATGGCAACGGCGACAGCAAAAGATAACAAGACCAAAAATAAAAATGCCAAGGCCCAGCCCAAGATCCATACCTTTACCTG
GAAAGGCCTCAATCGCGATGGTAAGCAAAGCTCGGGTGAACTGCGTGGCACCAGCATCACAGAGATAAAAACCCTGCTTA
AAAGCCAGGGGATCAACCCTAAACTGGTTCGCAAGAAGTCTGCGTCTCTTTTCGGTGGCGATAAAAAAATTAAGCCGATG
GATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCGGGTGTTCCCTTGGTCACTTCTATCGAACTTATCGC
CCGCGGCCACGAAAAAAATAAAGTACGTACCTTACTGGGGACAGTTTTAACCGATGTTCAGGCAGGTATCCCACTCTCAG
ATGCCCTCCGTCCCCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAGCACTCAGGCTCTTTG
GATGCCGTATTCGACCGTATCGCCACATACCGGGAAAAAGCTGAAGCCCTCAAGTCAAAAATTAAAAAGGCTATGTTCTA
CCCTGCCGCTGTAGTAGTGGTTGCTATAGCTGTTACTGTACTGTTGCTTTTGTTTGTTGTACCACAATTTGAAAGCATAT
TCGCGAGCTTTGGGGCCGAATTACCTGCCTTTACCCAATTTATTGTTAATGTCAGTCGCTGGCTTCAAAGCACTTGGTAT
CTATTCTTGGCTGCGATAGTTATCGCTATTTGGCTCTTCATACGCGCTCACCGCAACTCTGAGCACTTTCGTAACCGTAT
TGATGAAATGGTATTGAAGATCCCTTTGATAGGAGAAATTCTTCATAAAGCCGCTATGGCCCGTTTTGCCCGCACTCTGG
CCACCACTTTTGCAGCCGGGGTGCCGCTGATTGATGGCTTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTCTACCGC
AAGGCGCTGTTAAATGTGCGTACCGAAGTAATGGCCGGGATGCAGATGAATGTGGCCATGCGCACTACCAAGCTTTTTCC
CGATATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGACAACATGCTCAACAAGATTGCCAATATCT
ACGAGATGCAGGTAGACGATGCCGTAGATGGGCTCTCCAGTCTAATAGAACCAGTCATGATGGTAGTTATCGGCACTCTG
GTTGGTGGCCTTATCGTCGGCATGTACCTACCTATCTTCCAGATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.391

95

0.536
  pilC Acinetobacter baylyi ADP1

50.493

96.667

0.488
  pilC Acinetobacter baumannii D1279779

49.02

97.143

0.476
  pilC Legionella pneumophila strain ERS1305867

48.515

96.19

0.467
  pilC Vibrio cholerae strain A1552

46.633

95.476

0.445
  pilC Vibrio campbellii strain DS40M4

45.05

96.19

0.433
  pilG Neisseria meningitidis 44/76-A

43.005

91.905

0.395
  pilG Neisseria gonorrhoeae MS11

43.081

91.19

0.393

Multiple sequence alignment