Detailed information NTG0315625

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D3X10_RS11280
• Genome accession: NZ_CP032415
• Coordinates: 2334693..2335607 (+)
• Length: 304 a.a.
• NCBI ID: WP_117200237.1
• Uniprot ID: -
• Organism: Shewanella algae strain VGH117
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2329693..2340607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3X10_RS11265 (D3X10_11325)	-	2331036..2331476 (+)	441	WP_117200240.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
D3X10_RS11270 (D3X10_11330)	pilB	2331498..2333204 (+)	1707	WP_117200239.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D3X10_RS11275 (D3X10_11335)	pilC	2333361..2334623 (+)	1263	WP_117200238.1	type II secretion system F family protein	Machinery gene
D3X10_RS11280 (D3X10_11340)	pilD	2334693..2335607 (+)	915	WP_117200237.1	A24 family peptidase	Machinery gene
D3X10_RS11285 (D3X10_11345)	coaE	2335608..2336219 (+)	612	WP_117200236.1	dephospho-CoA kinase	-
D3X10_RS11290 (D3X10_11350)	zapD	2336216..2336956 (+)	741	WP_028779562.1	cell division protein ZapD	-
D3X10_RS11295 (D3X10_11355)	yacG	2337001..2337213 (+)	213	WP_025886789.1	DNA gyrase inhibitor YacG	-
D3X10_RS11300 (D3X10_11360)	mutT	2337213..2337611 (+)	399	WP_117200235.1	8-oxo-dGTP diphosphatase MutT	-
D3X10_RS11305 (D3X10_11365)	-	2337682..2337945 (+)	264	Protein_2030	transposase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33853.24 Da
• Isoelectric Point: 7.2147

>NTDB_id=315625 D3X10_RS11280 WP_117200237.1 2334693..2335607(+) (pilD) [Shewanella algae strain VGH117]
MSEFIAVLSHNQWLFLVLCFLFASLIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLLLPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide

• Length: 915 bp

>NTDB_id=315625 D3X10_RS11280 WP_117200237.1 2334693..2335607(+) (pilD) [Shewanella algae strain VGH117]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCACTGATAGG
CAGCTTTCTCAATGTGGTGATCCACCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGTTACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTCGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTGTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.169	99.013	0.487
pilD	Vibrio cholerae strain A1552	50	96.053	0.48
pilD	Acinetobacter nosocomialis M2	48.013	99.342	0.477
pilD	Acinetobacter baumannii D1279779	47.682	99.342	0.474
pilD	Neisseria gonorrhoeae MS11	45.552	92.434	0.421