Detailed information NTG0315513

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: D5R92_RS06520
• Genome accession: NZ_CP032401
• Coordinates: 1306419..1306814 (+)
• Length: 131 a.a.
• NCBI ID: WP_003098836.1
• Uniprot ID: A0A3L8GMQ5
• Organism: Streptococcus iniae strain GX005
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1301419..1311814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R92_RS06480 (D5R92_06480)	-	1301504..1301956 (+)	453	WP_003098820.1	hypothetical protein	-
D5R92_RS06485 (D5R92_06485)	-	1301966..1302622 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
D5R92_RS06490 (D5R92_06490)	proC	1302656..1303426 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-
D5R92_RS06495 (D5R92_06495)	pepA	1303450..1304517 (-)	1068	WP_003098826.1	glutamyl aminopeptidase	-
D5R92_RS06500 (D5R92_06500)	-	1304658..1304942 (+)	285	WP_003098828.1	DUF4651 domain-containing protein	-
D5R92_RS06505 (D5R92_06505)	-	1304939..1305256 (+)	318	WP_003098830.1	thioredoxin family protein	-
D5R92_RS06510 (D5R92_06510)	ytpR	1305273..1305899 (+)	627	WP_003098832.1	YtpR family tRNA-binding protein	-
D5R92_RS06515 (D5R92_06515)	-	1305937..1306347 (-)	411	WP_003098834.1	GNAT family N-acetyltransferase	-
D5R92_RS06520 (D5R92_06520)	ssbA	1306419..1306814 (+)	396	WP_003098836.1	single-stranded DNA-binding protein	Machinery gene
D5R92_RS06525 (D5R92_06525)	-	1307288..1308250 (+)	963	WP_003098839.1	ABC transporter substrate-binding protein	-
D5R92_RS06530 (D5R92_06530)	-	1308264..1309226 (+)	963	WP_003098841.1	ABC transporter substrate-binding protein	-
D5R92_RS06535 (D5R92_06535)	-	1309236..1310120 (+)	885	WP_003098842.1	ABC transporter permease	-
D5R92_RS06540 (D5R92_06540)	-	1310129..1310932 (+)	804	WP_003098843.1	ABC transporter ATP-binding protein	-
D5R92_RS06545 (D5R92_06545)	-	1310993..1311637 (-)	645	WP_003098844.1	deoxynucleoside kinase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 15061.41 Da
• Isoelectric Point: 5.9574

>NTDB_id=315513 D5R92_RS06520 WP_003098836.1 1306419..1306814(+) (ssbA) [Streptococcus iniae strain GX005]
MYNKVVMIGRLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGSKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=315513 D5R92_RS06520 WP_003098836.1 1306419..1306814(+) (ssbA) [Streptococcus iniae strain GX005]
ATGTATAATAAAGTCGTAATGATTGGCCGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCAGCAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3L8GMQ5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	73.282	100	0.733
ssbB/cilA	Streptococcus pneumoniae Rx1	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae D39	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae R6	67.176	100	0.672
ssbB/cilA	Streptococcus mitis NCTC 12261	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae TIGR4	66.412	100	0.664
ssbB/cilA	Streptococcus mitis SK321	66.412	100	0.664
ssbB	Streptococcus sobrinus strain NIDR 6715-7	65.649	100	0.656
ssbB	Lactococcus lactis subsp. cremoris KW2	57.143	85.496	0.489