Detailed information NTG0315458

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: D5R90_RS06555
• Genome accession: NZ_CP032400
• Coordinates: 1312964..1313359 (+)
• Length: 131 a.a.
• NCBI ID: WP_003098836.1
• Uniprot ID: A0A3L8GMQ5
• Organism: Streptococcus iniae strain YM011
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1307964..1318359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R90_RS06515 (D5R90_06515)	-	1308049..1308501 (+)	453	WP_003098820.1	hypothetical protein	-
D5R90_RS06520 (D5R90_06520)	-	1308511..1309167 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
D5R90_RS06525 (D5R90_06525)	proC	1309201..1309971 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-
D5R90_RS06530 (D5R90_06530)	pepA	1309995..1311062 (-)	1068	WP_003098826.1	glutamyl aminopeptidase	-
D5R90_RS06535 (D5R90_06535)	-	1311203..1311487 (+)	285	WP_003098828.1	DUF4651 domain-containing protein	-
D5R90_RS06540 (D5R90_06540)	-	1311484..1311801 (+)	318	WP_003098830.1	thioredoxin family protein	-
D5R90_RS06545 (D5R90_06545)	ytpR	1311818..1312444 (+)	627	WP_003098832.1	YtpR family tRNA-binding protein	-
D5R90_RS06550 (D5R90_06550)	-	1312482..1312892 (-)	411	WP_003098834.1	GNAT family N-acetyltransferase	-
D5R90_RS06555 (D5R90_06555)	ssbA	1312964..1313359 (+)	396	WP_003098836.1	single-stranded DNA-binding protein	Machinery gene
D5R90_RS06560 (D5R90_06560)	-	1313833..1314795 (+)	963	WP_003098839.1	ABC transporter substrate-binding protein	-
D5R90_RS06565 (D5R90_06565)	-	1314809..1315771 (+)	963	WP_003098841.1	ABC transporter substrate-binding protein	-
D5R90_RS06570 (D5R90_06570)	-	1315781..1316665 (+)	885	WP_003098842.1	ABC transporter permease	-
D5R90_RS06575 (D5R90_06575)	-	1316674..1317477 (+)	804	WP_003098843.1	ABC transporter ATP-binding protein	-
D5R90_RS06580 (D5R90_06580)	-	1317538..1318182 (-)	645	WP_003098844.1	deoxynucleoside kinase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 15061.41 Da
• Isoelectric Point: 5.9574

>NTDB_id=315458 D5R90_RS06555 WP_003098836.1 1312964..1313359(+) (ssbA) [Streptococcus iniae strain YM011]
MYNKVVMIGRLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGSKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=315458 D5R90_RS06555 WP_003098836.1 1312964..1313359(+) (ssbA) [Streptococcus iniae strain YM011]
ATGTATAATAAAGTCGTAATGATTGGCCGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCAGCAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3L8GMQ5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	73.282	100	0.733
ssbB/cilA	Streptococcus pneumoniae Rx1	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae D39	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae R6	67.176	100	0.672
ssbB/cilA	Streptococcus mitis NCTC 12261	67.176	100	0.672
ssbB/cilA	Streptococcus pneumoniae TIGR4	66.412	100	0.664
ssbB/cilA	Streptococcus mitis SK321	66.412	100	0.664
ssbB	Streptococcus sobrinus strain NIDR 6715-7	65.649	100	0.656
ssbB	Lactococcus lactis subsp. cremoris KW2	57.143	85.496	0.489