Detailed information NTG0314954

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: D3Z90_RS25170
• Genome accession: NZ_CP032311
• Coordinates: 5496885..5498174 (-)
• Length: 429 a.a.
• NCBI ID: WP_136478581.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DG56-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5491885..5503174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3Z90_RS25155	-	5493546..5495147 (-)	1602	WP_136478578.1	AAA family ATPase	-
D3Z90_RS25160	aroB	5495164..5496261 (-)	1098	WP_136478579.1	3-dehydroquinate synthase	-
D3Z90_RS25165	aroK	5496362..5496880 (-)	519	WP_136478580.1	shikimate kinase AroK	-
D3Z90_RS25170	pilQ	5496885..5498174 (-)	1290	WP_136478581.1	type IV pilus secretin PilQ	Machinery gene
D3Z90_RS25175	-	5498199..5499125 (-)	927	WP_136478582.1	pilus assembly protein PilP	-
D3Z90_RS25180	-	5499134..5499661 (-)	528	WP_136478583.1	PilN domain-containing protein	-
D3Z90_RS25185	pilM	5499649..5500587 (-)	939	WP_136478584.1	type IV pilus biogenesis protein PilM	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46704.72 Da
• Isoelectric Point: 5.2512

>NTDB_id=314954 D3Z90_RS25170 WP_136478581.1 5496885..5498174(-) (pilQ) [Pseudomonas sp. DG56-2]
MKTKWSEAAIAWLVAWGLVNPMAVGSVERDRALSLNFQDVEVRAVLQVLADFSGVNLVASDAVQGRVSLRLQEVPWEQAL
DLVLRSKGLEKRAEGNVLLIAPIAELAGYEKQLLEGRQRVAGLAPMRRELLPIHYAQAKDIAAVFQTLAPTDPLAPGQGA
LSVDERTNTLIAHQPLERLEELKEMITRLDVPVRQVMIEARIVEANVDFEKSLGVRWGAQASSGSGLGSAAGDTFVDLGV
ERATSAIGLGLVRDNLLLDLQLSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVT
PQITPDNRVIMAVKVTKDEPDYLNALAQVPAIRKNEVNAKVRVRDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFR
RDVLQEKKSELLVFLTPRIMSDQAIAVSR

Nucleotide

• Length: 1290 bp

>NTDB_id=314954 D3Z90_RS25170 WP_136478581.1 5496885..5498174(-) (pilQ) [Pseudomonas sp. DG56-2]
ATGAAGACAAAGTGGAGCGAGGCAGCAATCGCCTGGCTGGTTGCGTGGGGGCTAGTGAACCCGATGGCCGTTGGCAGCGT
CGAGCGTGACCGAGCGTTGTCGTTGAATTTTCAGGATGTTGAGGTGCGCGCGGTACTGCAGGTGCTGGCCGACTTCAGTG
GGGTAAATCTGGTTGCCAGTGATGCCGTGCAAGGTCGGGTTTCCTTGCGTTTGCAGGAGGTGCCCTGGGAGCAGGCGCTG
GATCTGGTGCTGCGCAGCAAAGGCCTGGAAAAACGTGCCGAAGGCAATGTCTTGCTGATAGCGCCGATCGCGGAGCTTGC
GGGGTACGAAAAACAGCTGCTCGAAGGGCGTCAGCGGGTGGCTGGGCTGGCGCCGATGCGCCGTGAGTTGCTGCCGATTC
ATTATGCCCAGGCGAAAGATATTGCCGCAGTATTCCAGACGCTTGCGCCGACTGATCCATTGGCACCCGGGCAGGGGGCG
CTGAGTGTCGATGAACGAACCAACACCCTGATCGCTCATCAGCCCCTCGAGCGGCTCGAAGAACTAAAGGAAATGATCAC
TCGCCTGGATGTGCCGGTGCGCCAGGTGATGATCGAGGCGCGAATTGTCGAAGCCAATGTCGATTTCGAGAAAAGCCTTG
GCGTGCGCTGGGGCGCGCAAGCAAGTTCAGGCAGTGGCCTTGGCTCCGCGGCTGGCGACACGTTTGTCGATTTGGGCGTG
GAGCGGGCCACCTCGGCCATTGGCCTGGGCCTTGTGCGAGACAACCTGTTGCTGGACTTGCAGCTCAGTGCCATGGAGAA
GTCCGGCAATGGTGAAATCATCTCCCAGCCCAAGGTGGTCACGGCCGACAAGGAGACCGCCCGGATTCTCAAGGGCACCG
AAGTGCCCTACCAGGAAACCAGCGGCAGCGGCGCTACTTCGGTGACTTTTCGCGAAGCCTCGCTATCGCTGGAAGTGACT
CCGCAGATTACCCCGGACAATCGGGTAATCATGGCGGTGAAGGTCACCAAGGACGAACCCGACTACCTCAACGCCCTTGC
TCAGGTGCCGGCAATCCGCAAAAACGAGGTCAATGCCAAGGTTCGTGTACGCGATGGGGAAACTATCGTGATTGGCGGCG
TGTACTCCACTGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCGGCGATGTGCCGTATGTTGGGCGGCTGTTTCGT
CGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGT
GAGTCGTTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (264-420)

• Bacterial type II/III secretion system short domain (Secretin_N) (130-195)

• Secretin and TonB N terminus short domain (STN) (56-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	58.37	100	0.618
pilQ	Vibrio cholerae strain A1552	41.573	100	0.431
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.573	100	0.431
pilQ	Acinetobacter baumannii D1279779	39.738	100	0.424
pilQ	Acinetobacter baumannii strain A118	39.738	100	0.424
comQ	Acinetobacter baylyi ADP1	40.625	100	0.424
pilQ	Legionella pneumophila strain Lp02	42.892	96.737	0.415
pilQ	Legionella pneumophila strain ERS1305867	42.892	96.737	0.415
pilQ	Vibrio campbellii strain DS40M4	41.469	98.368	0.408