Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   E4T63_RS10235 Genome accession   NZ_CP038438
Coordinates   2277987..2278622 (+) Length   211 a.a.
NCBI ID   WP_007951559.1    Uniprot ID   A0ABX7GBN9
Organism   Pseudomonas fluorescens strain LBUM677     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2272987..2283622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS10200 (E4T63_10200) - 2273743..2274138 (-) 396 WP_205884904.1 hypothetical protein -
  E4T63_RS10205 (E4T63_10205) folD 2274576..2275430 (-) 855 WP_003223627.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  E4T63_RS10230 (E4T63_10230) tig 2276584..2277894 (+) 1311 WP_027614582.1 trigger factor -
  E4T63_RS10235 (E4T63_10235) clpP 2277987..2278622 (+) 636 WP_007951559.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  E4T63_RS10240 (E4T63_10240) clpX 2278735..2280018 (+) 1284 WP_003223632.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E4T63_RS10245 (E4T63_10245) lon 2280182..2282578 (+) 2397 WP_003223634.1 endopeptidase La -
  E4T63_RS10250 (E4T63_10250) - 2282727..2282999 (+) 273 WP_008077714.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23449.84 Da        Isoelectric Point: 5.3139

>NTDB_id=314874 E4T63_RS10235 WP_007951559.1 2277987..2278622(+) (clpP) [Pseudomonas fluorescens strain LBUM677]
MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL
FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=314874 E4T63_RS10235 WP_007951559.1 2277987..2278622(+) (clpP) [Pseudomonas fluorescens strain LBUM677]
ATGTTCCGTAATTCGTATATTCAGCAGAACTCTGATATCCAGGCCGCTGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC
TGCTCGTGGCGAGCGCGCCTATGACATCTACTCGCGCCTTCTGAAGGAGCGCGTCATTTTTCTGGTGGGTCCTGTAGAGG
ACTACATGGCCAACCTGATCTGTGCGCAATTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTCTATATC
AACTCCCCGGGCGGTTCGGTGACAGCGGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTCTCGACGAC
GTGCATTGGTCAGGCGTGCAGCATGGGTGCATTCCTGCTGACGGCCGGTGCTCCTGGCAAGCGTTTCTGCCTGCCGAACT
CGCGTGTGATGATTCACCAGCCACTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAAATCCATGCCAAGGAAATCCTC
TTCATTCGCGAGCGTCTGAACACGCTGATGGCCAAGCACAGCGGTCGTACGCTTGAAGAAATCGAGCGTGACACCAACCG
CGACAACTTCATGAGTGCAGAAGCTGCGAAGGAATACGGCCTGATCGACGAAGTCATCAACCAGCGTCCTGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.368

90.047

0.607
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.737

90.047

0.583
  clpP Lactococcus lactis subsp. cremoris KW2

56.771

90.995

0.517
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.208

90.995

0.502
  clpP Streptococcus pneumoniae Rx1

53.158

90.047

0.479
  clpP Streptococcus pneumoniae D39

53.158

90.047

0.479
  clpP Streptococcus pneumoniae R6

53.158

90.047

0.479
  clpP Streptococcus pneumoniae TIGR4

53.158

90.047

0.479
  clpP Streptococcus mutans UA159

53.158

90.047

0.479
  clpP Streptococcus pyogenes JRS4

52.632

90.047

0.474
  clpP Streptococcus pyogenes MGAS315

52.632

90.047

0.474
  clpP Streptococcus thermophilus LMG 18311

52.632

90.047

0.474
  clpP Streptococcus thermophilus LMD-9

52.632

90.047

0.474

Multiple sequence alignment