Detailed information NTG0314875

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: E4T63_RS10240
• Genome accession: NZ_CP038438
• Coordinates: 2278735..2280018 (+)
• Length: 427 a.a.
• NCBI ID: WP_003223632.1
• Uniprot ID: A0ABS0BMQ5
• Organism: Pseudomonas fluorescens strain LBUM677
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2273735..2285018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4T63_RS10200 (E4T63_10200)	-	2273743..2274138 (-)	396	WP_205884904.1	hypothetical protein	-
E4T63_RS10205 (E4T63_10205)	folD	2274576..2275430 (-)	855	WP_003223627.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
E4T63_RS10230 (E4T63_10230)	tig	2276584..2277894 (+)	1311	WP_027614582.1	trigger factor	-
E4T63_RS10235 (E4T63_10235)	clpP	2277987..2278622 (+)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
E4T63_RS10240 (E4T63_10240)	clpX	2278735..2280018 (+)	1284	WP_003223632.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
E4T63_RS10245 (E4T63_10245)	lon	2280182..2282578 (+)	2397	WP_003223634.1	endopeptidase La	-
E4T63_RS10250 (E4T63_10250)	-	2282727..2282999 (+)	273	WP_008077714.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46956.59 Da
• Isoelectric Point: 4.8431

>NTDB_id=314875 E4T63_RS10240 WP_003223632.1 2278735..2280018(+) (clpX) [Pseudomonas fluorescens strain LBUM677]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPTAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=314875 E4T63_RS10240 WP_003223632.1 2278735..2280018(+) (clpX) [Pseudomonas fluorescens strain LBUM677]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTGCG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCACAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGACCAGTATGTAATC
GGTCAGGAGCGTGCGAAAAAGGTTCTGGCCGTAGCGGTGTACAACCACTACAAGCGCCTGAACCAGCGTGACAAGAAGGC
TGACGACGTCGAACTCGGCAAGAGCAACATCCTGCTGATCGGCCCGACAGGCTCCGGTAAAACCCTGCTGGCCGAAACAC
TGGCCCGCCTGCTGAACGTTCCGTTCACCATCGCTGACGCAACCACCCTCACCGAGGCCGGTTACGTAGGTGAAGATGTC
GAGAACATCATTCAGAAATTGCTGCAAAAGTGCGATTACGACGTGGAAAAGGCCCAGATGGGCATTGTCTATATCGACGA
AATCGACAAGATTTCCCGCAAGTCCGACAACCCGTCGATCACCCGCGATGTTTCCGGTGAAGGCGTGCAGCAGGCCTTGC
TCAAGTTGATCGAAGGCACGGTCGCTTCCGTTCCACCGCAAGGTGGTCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTC
GACACCCGTAACATCCTGTTCATCTGCGGTGGTGCGTTCTCTGGTCTGGAAAAGGTTATCCAAAACCGTTCCACCAAAGG
CGGCATCGGTTTCAACGCAGAAGTGCGCAGCAAGGAAGAAGGCAAGAAAGTCGGTGAATCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTTGTCGGTCGTCTGCCGGTTCTTGCGACGCTGGACGAGCTCGACGAG
GCTGCGTTGATGCAGATCCTCACCGAGCCGAAAAATGCTCTGACCAAACAGTATGCCAAGCTGTTCGAGATGGAAGGCGT
GGATCTGGAGTTCCGGACCGACGCACTGAAATCGGTCGCCAAACGTGCTCTGGAACGTAAAACCGGTGCCCGTGGCCTGC
GTTCGATTCTCGAAGGTGTGCTGCTCGACACGATGTACGAAATCCCTTCGCAGTCCGAGGTGAGCAAAGTCGTCATCGAT
GAAAGCGTGATTGAAGGCAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCGACGGCCAAGGCAGCGCCGGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.837	95.082	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.436	94.614	0.534