Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CDG62_RS11390 | Genome accession | NZ_CP032286 |
| Coordinates | 1768715..1769908 (-) | Length | 397 a.a. |
| NCBI ID | WP_087528083.1 | Uniprot ID | A0A385NAB6 |
| Organism | Acinetobacter sp. WCHA55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1765858..1821438 | 1768715..1769908 | within | 0 |
Gene organization within MGE regions
Location: 1765858..1821438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG62_RS11380 (CDG62_11385) | gcvH | 1766855..1767229 (+) | 375 | WP_087528085.1 | glycine cleavage system protein GcvH | - |
| CDG62_RS11385 (CDG62_11390) | - | 1767489..1768667 (+) | 1179 | WP_087528084.1 | MFS transporter | - |
| CDG62_RS11390 (CDG62_11395) | pilU | 1768715..1769908 (-) | 1194 | WP_087528083.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CDG62_RS11395 (CDG62_11400) | - | 1770145..1771206 (-) | 1062 | WP_087528082.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| CDG62_RS19825 | - | 1771185..1771298 (+) | 114 | WP_157843581.1 | hypothetical protein | - |
| CDG62_RS11400 (CDG62_11405) | - | 1771698..1773797 (-) | 2100 | WP_087528081.1 | EAL domain-containing protein | - |
| CDG62_RS11405 (CDG62_11410) | - | 1774270..1775439 (-) | 1170 | WP_087528080.1 | fatty acid desaturase family protein | - |
| CDG62_RS11410 (CDG62_11415) | - | 1775452..1776480 (-) | 1029 | WP_087528079.1 | flavin reductase family protein | - |
| CDG62_RS11415 (CDG62_11420) | - | 1776708..1777823 (-) | 1116 | WP_087528078.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| CDG62_RS11420 (CDG62_11425) | - | 1777942..1779495 (+) | 1554 | WP_087528077.1 | phospholipase D family protein | - |
| CDG62_RS11425 (CDG62_11430) | - | 1779755..1780192 (+) | 438 | WP_087528076.1 | hypothetical protein | - |
| CDG62_RS11430 (CDG62_11435) | - | 1780255..1780848 (-) | 594 | WP_087528075.1 | uracil-DNA glycosylase family protein | - |
| CDG62_RS11435 (CDG62_11440) | - | 1780879..1781589 (-) | 711 | WP_087528074.1 | SGNH/GDSL hydrolase family protein | - |
| CDG62_RS11440 (CDG62_11445) | - | 1781766..1782089 (-) | 324 | WP_087528073.1 | pyrimidine/purine nucleoside phosphorylase | - |
| CDG62_RS11445 (CDG62_11450) | - | 1782239..1782982 (-) | 744 | WP_087528072.1 | SDR family oxidoreductase | - |
| CDG62_RS11450 (CDG62_11455) | - | 1782998..1783696 (-) | 699 | WP_087528071.1 | histidine phosphatase family protein | - |
| CDG62_RS11455 (CDG62_11460) | - | 1783693..1784814 (-) | 1122 | WP_087528070.1 | phosphotransferase family protein | - |
| CDG62_RS11460 (CDG62_11465) | - | 1784911..1786152 (-) | 1242 | WP_087528069.1 | acyl-CoA dehydrogenase family protein | - |
| CDG62_RS11465 (CDG62_11470) | - | 1786251..1787168 (+) | 918 | WP_087528068.1 | LysR family transcriptional regulator | - |
| CDG62_RS11470 (CDG62_11475) | - | 1787239..1787642 (+) | 404 | Protein_1656 | transposase | - |
| CDG62_RS11475 (CDG62_11480) | - | 1787928..1788458 (+) | 531 | WP_087528067.1 | thermonuclease family protein | - |
| CDG62_RS11480 (CDG62_11485) | - | 1788517..1789119 (-) | 603 | WP_087528066.1 | nitroreductase family protein | - |
| CDG62_RS11485 (CDG62_11490) | - | 1789307..1789798 (-) | 492 | WP_087528065.1 | hypothetical protein | - |
| CDG62_RS11490 (CDG62_11495) | fumC | 1789906..1791300 (-) | 1395 | WP_087528064.1 | class II fumarate hydratase | - |
| CDG62_RS11495 (CDG62_11500) | - | 1791412..1792419 (-) | 1008 | WP_087528063.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| CDG62_RS11500 (CDG62_11505) | - | 1792766..1793257 (+) | 492 | WP_087528062.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDG62_RS11505 (CDG62_11510) | - | 1793260..1793598 (+) | 339 | WP_087528061.1 | DUF6616 family protein | - |
| CDG62_RS11510 (CDG62_11515) | - | 1793882..1794391 (-) | 510 | WP_087528060.1 | cytochrome b | - |
| CDG62_RS11515 (CDG62_11520) | istB | 1794543..1795283 (-) | 741 | WP_087528059.1 | IS21-like element helper ATPase IstB | - |
| CDG62_RS11520 (CDG62_11525) | istA | 1795297..1796838 (-) | 1542 | WP_087528058.1 | IS21 family transposase | - |
| CDG62_RS11525 (CDG62_11530) | - | 1797026..1797205 (-) | 180 | WP_087528057.1 | DNA-binding protein | - |
| CDG62_RS11530 (CDG62_11535) | - | 1797328..1797807 (-) | 480 | WP_087528056.1 | hypothetical protein | - |
| CDG62_RS11535 (CDG62_11540) | - | 1797902..1798108 (+) | 207 | WP_087528055.1 | helix-turn-helix domain-containing protein | - |
| CDG62_RS11540 (CDG62_11545) | - | 1798216..1802739 (+) | 4524 | WP_228254387.1 | hypothetical protein | - |
| CDG62_RS11545 (CDG62_11550) | tnpA | 1802817..1803245 (+) | 429 | WP_000364662.1 | IS66-like element accessory protein TnpA | - |
| CDG62_RS11550 (CDG62_11555) | tnpB | 1803242..1803577 (+) | 336 | WP_000618090.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CDG62_RS11555 (CDG62_11560) | - | 1803652..1805298 (+) | 1647 | WP_087528919.1 | IS66-like element ISAba17 family transposase | - |
| CDG62_RS11560 (CDG62_11565) | - | 1805387..1807060 (+) | 1674 | WP_228254388.1 | hypothetical protein | - |
| CDG62_RS11565 (CDG62_11570) | - | 1807050..1807697 (+) | 648 | WP_087528916.1 | hypothetical protein | - |
| CDG62_RS11570 (CDG62_11575) | - | 1807821..1808075 (-) | 255 | WP_087528915.1 | hypothetical protein | - |
| CDG62_RS11575 (CDG62_11580) | - | 1808594..1809799 (-) | 1206 | WP_004973108.1 | IS256 family transposase | - |
| CDG62_RS11580 (CDG62_11585) | - | 1809783..1810544 (-) | 762 | WP_087528898.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| CDG62_RS11585 (CDG62_11590) | - | 1810580..1811458 (-) | 879 | WP_087528897.1 | TauD/TfdA family dioxygenase | - |
| CDG62_RS19775 | - | 1811555..1811983 (-) | 429 | WP_322900174.1 | hypothetical protein | - |
| CDG62_RS11590 (CDG62_11595) | - | 1812041..1813057 (-) | 1017 | WP_322900175.1 | AMP-binding protein | - |
| CDG62_RS11595 (CDG62_11600) | - | 1813054..1813815 (-) | 762 | WP_087528896.1 | thermostable hemolysin | - |
| CDG62_RS19830 | - | 1814178..1814318 (-) | 141 | Protein_1683 | transposase | - |
| CDG62_RS19835 | - | 1814299..1814528 (-) | 230 | Protein_1684 | transposase | - |
| CDG62_RS11605 (CDG62_11610) | - | 1814582..1814830 (-) | 249 | Protein_1685 | glycosyl hydrolase 108 family protein | - |
| CDG62_RS11620 (CDG62_11625) | - | 1816430..1816714 (-) | 285 | WP_228254389.1 | hypothetical protein | - |
| CDG62_RS11625 (CDG62_11630) | - | 1816811..1817196 (-) | 386 | Protein_1688 | hypothetical protein | - |
| CDG62_RS11635 (CDG62_11640) | tusD | 1817724..1818092 (+) | 369 | WP_087528656.1 | sulfurtransferase complex subunit TusD | - |
| CDG62_RS11640 (CDG62_11645) | - | 1818137..1818487 (+) | 351 | WP_087528655.1 | hypothetical protein | - |
| CDG62_RS11645 (CDG62_11650) | - | 1818499..1818780 (+) | 282 | WP_087528654.1 | DsrH/TusB family sulfur metabolism protein | - |
| CDG62_RS11650 (CDG62_11655) | - | 1818795..1819106 (+) | 312 | WP_087528653.1 | TusE/DsrC/DsvC family sulfur relay protein | - |
| CDG62_RS11655 (CDG62_11660) | - | 1819109..1819597 (-) | 489 | WP_087528652.1 | winged helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 44748.10 Da Isoelectric Point: 6.5064
>NTDB_id=314746 CDG62_RS11390 WP_087528083.1 1768715..1769908(-) (pilU) [Acinetobacter sp. WCHA55]
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPNFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAISYEEALRNADSVNELRLQIKLKSSRANPQLNSNSALSFDQAVAEKNKEAEEEKADA
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPNFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAISYEEALRNADSVNELRLQIKLKSSRANPQLNSNSALSFDQAVAEKNKEAEEEKADA
Nucleotide
Download Length: 1194 bp
>NTDB_id=314746 CDG62_RS11390 WP_087528083.1 1768715..1769908(-) (pilU) [Acinetobacter sp. WCHA55]
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGGATGATGTTTCACATGCTTAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTCATGAAGCCGCTCGGTCAACAAAACTTGC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAATGAGAAGCAACGATTAGAGTTCGAAACCGAGCTTGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTTTCGCGTTTTCGTGTCAATGTTTTTCAGCAGCAACTGCATGTAGGTATGGTGAT
TCGTACGATTACTGCGGAAATTCCTAACTTCACTAAATTACAACTTCCAACGTCTTTAAAAGACGTAATTATGGAAAAAC
GTGGTTTAGTACTCGTTGTTGGTGGTACAGGGTCAGGTAAATCTACGTCTTTGGCAGCGATGATTGATCATCGAAATGAG
AACTCGGCAGGGCACATTATTACAGTTGAAGACCCAGTGGAGTATGTTCACAAACATAAGAAATCGATGATTACTCATCG
AGAAGTAGGTGTGGACTGTCACTCTTGGCACAATGCTTTGAAAAATACTCTGCGCCAAGCACCCGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACTATGGAGCATGCTATAGCTTTTGCAGAAACAGGCCACTTATGTCTTGGGACACTGCAT
GCCAATAATGCAAATCAGGCTTTAGATCGTATTATTAACTTTTTCCCAGATGAACGTCGCAATCAACTTTTGATGGACTT
ATCCTCCAATATGAAAGCGATTATTTCACAGCGCTTGGTACGAACTGAAGATGGACGTGGCCGCCGAGCAGCAGTTGAAA
TCATGCTCAATACGCCGTTGATGTCAGACTTGATCCTTAAAGGGAATTTCCATGAACTGAAAGAAGTGATGTCAAAATCA
CGAGAGCTCGGTATGCAGACCTTCGACCAAGCTTTGTTTGATTTATACAATCAAGGTGCAATCTCTTATGAAGAAGCGCT
ACGAAATGCGGACTCGGTCAATGAATTACGCCTACAGATTAAATTAAAGAGTAGTCGTGCCAACCCGCAGTTAAACTCAA
ATAGTGCTTTGTCTTTTGATCAAGCGGTTGCTGAAAAGAACAAAGAAGCTGAAGAGGAGAAGGCTGACGCCTAA
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGGATGATGTTTCACATGCTTAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTCATGAAGCCGCTCGGTCAACAAAACTTGC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAATGAGAAGCAACGATTAGAGTTCGAAACCGAGCTTGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTTTCGCGTTTTCGTGTCAATGTTTTTCAGCAGCAACTGCATGTAGGTATGGTGAT
TCGTACGATTACTGCGGAAATTCCTAACTTCACTAAATTACAACTTCCAACGTCTTTAAAAGACGTAATTATGGAAAAAC
GTGGTTTAGTACTCGTTGTTGGTGGTACAGGGTCAGGTAAATCTACGTCTTTGGCAGCGATGATTGATCATCGAAATGAG
AACTCGGCAGGGCACATTATTACAGTTGAAGACCCAGTGGAGTATGTTCACAAACATAAGAAATCGATGATTACTCATCG
AGAAGTAGGTGTGGACTGTCACTCTTGGCACAATGCTTTGAAAAATACTCTGCGCCAAGCACCCGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACTATGGAGCATGCTATAGCTTTTGCAGAAACAGGCCACTTATGTCTTGGGACACTGCAT
GCCAATAATGCAAATCAGGCTTTAGATCGTATTATTAACTTTTTCCCAGATGAACGTCGCAATCAACTTTTGATGGACTT
ATCCTCCAATATGAAAGCGATTATTTCACAGCGCTTGGTACGAACTGAAGATGGACGTGGCCGCCGAGCAGCAGTTGAAA
TCATGCTCAATACGCCGTTGATGTCAGACTTGATCCTTAAAGGGAATTTCCATGAACTGAAAGAAGTGATGTCAAAATCA
CGAGAGCTCGGTATGCAGACCTTCGACCAAGCTTTGTTTGATTTATACAATCAAGGTGCAATCTCTTATGAAGAAGCGCT
ACGAAATGCGGACTCGGTCAATGAATTACGCCTACAGATTAAATTAAAGAGTAGTCGTGCCAACCCGCAGTTAAACTCAA
ATAGTGCTTTGTCTTTTGATCAAGCGGTTGCTGAAAAGAACAAAGAAGCTGAAGAGGAGAAGGCTGACGCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
59.331 |
90.428 |
0.537 |
| pilU | Acinetobacter baylyi ADP1 |
55.096 |
91.436 |
0.504 |
| pilU | Vibrio cholerae strain A1552 |
50.867 |
87.154 |
0.443 |
| pilT | Acinetobacter baylyi ADP1 |
43.068 |
85.39 |
0.368 |
| pilT | Acinetobacter nosocomialis M2 |
43.333 |
83.123 |
0.36 |
| pilT | Acinetobacter baumannii D1279779 |
43.333 |
83.123 |
0.36 |
| pilT | Acinetobacter baumannii strain A118 |
43.333 |
83.123 |
0.36 |