Detailed information NTG0314071

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: LL1196_RS02530
• Genome accession: NZ_CP032148
• Coordinates: 485083..485472 (+)
• Length: 129 a.a.
• NCBI ID: WP_011675463.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain 1196
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	485083..496692	485083..485472	within	0

Gene organization within MGE regions

Location: 485083..496692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL1196_RS02530 (LL1196_0480)	ssbB	485083..485472 (+)	390	WP_011675463.1	single-stranded DNA-binding protein	Machinery gene
LL1196_RS02535 (LL1196_0481)	groES	485591..485875 (+)	285	WP_011675464.1	co-chaperone GroES	-
LL1196_RS02540 (LL1196_0482)	groL	485962..487590 (+)	1629	WP_011675465.1	chaperonin GroEL	-
LL1196_RS02545 (LL1196_0483)	-	487642..488454 (-)	813	WP_021216212.1	MBL fold metallo-hydrolase	-
LL1196_RS02550 (LL1196_0484)	-	488644..490071 (-)	1428	WP_021216213.1	cell wall metabolism sensor histidine kinase WalK	-
LL1196_RS02555 (LL1196_0485)	yycF	490064..490765 (-)	702	WP_003131580.1	response regulator YycF	-
LL1196_RS02560 (LL1196_0486)	tmk	490943..491578 (+)	636	WP_015082045.1	dTMP kinase	-
LL1196_RS02565 (LL1196_0487)	-	491711..492571 (+)	861	WP_021216214.1	DNA polymerase III subunit delta'	-
LL1196_RS02570 (LL1196_0488)	ricT	492621..493403 (+)	783	WP_011834464.1	stage 0 sporulation family protein	-
LL1196_RS02575 (LL1196_0489)	yabA	493396..493722 (+)	327	WP_011675472.1	DNA replication initiation control protein YabA	-
LL1196_RS02580 (LL1196_0490)	rsmI	493722..494597 (+)	876	WP_011834466.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
LL1196_RS02585 (LL1196_0491)	-	494675..494866 (-)	192	WP_011675474.1	hypothetical protein	-
LL1196_RS02590 (LL1196_0492)	-	494941..495750 (-)	810	WP_021216215.1	ABC transporter permease	-
LL1196_RS02595 (LL1196_0493)	-	495763..496692 (-)	930	WP_011675476.1	daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 129 a.a.
• Molecular weight: 14650.71 Da
• Isoelectric Point: 6.4793

>NTDB_id=314071 LL1196_RS02530 WP_011675463.1 485083..485472(+) (ssbB) [Lactococcus cremoris strain 1196]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF

Nucleotide

• Length: 390 bp

>NTDB_id=314071 LL1196_RS02530 WP_011675463.1 485083..485472(+) (ssbB) [Lactococcus cremoris strain 1196]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Lactococcus lactis subsp. cremoris KW2	96.899	100	0.969
ssbB	Streptococcus sobrinus strain NIDR 6715-7	60	100	0.605
ssbB/cilA	Streptococcus pneumoniae TIGR4	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae Rx1	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae D39	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae R6	55.385	100	0.558
ssbB/cilA	Streptococcus mitis NCTC 12261	55.385	100	0.558
ssbB/cilA	Streptococcus mitis SK321	55.385	100	0.558
ssbA	Streptococcus mutans UA159	55.385	100	0.558