Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CDG61_RS01840 Genome accession   NZ_CP032143
Coordinates   302398..304524 (+) Length   708 a.a.
NCBI ID   WP_171405620.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297398..309524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS01820 (CDG61_01820) pilM 299362..300420 (+) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  CDG61_RS01825 (CDG61_01825) pilN 300420..301088 (+) 669 WP_087549836.1 PilN domain-containing protein Machinery gene
  CDG61_RS01830 (CDG61_01830) pilO 301085..301813 (+) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG61_RS01835 (CDG61_01835) pilP 301813..302337 (+) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  CDG61_RS01840 (CDG61_01840) pilQ 302398..304524 (+) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG61_RS01845 (CDG61_01845) aroK 304560..305099 (+) 540 WP_087549840.1 shikimate kinase AroK -
  CDG61_RS01850 (CDG61_01850) aroB 305125..306204 (+) 1080 WP_087549841.1 3-dehydroquinate synthase -
  CDG61_RS01855 (CDG61_01855) - 306215..307042 (+) 828 WP_087549842.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76442.55 Da        Isoelectric Point: 5.2243

>NTDB_id=313852 CDG61_RS01840 WP_171405620.1 302398..304524(+) (pilQ) [Acinetobacter sp. WCHAc010052]
MNNLFRQFSMGAVAMAVMQAASAQVSITNIVPMQIPGQGTEVRVMFNGLPPQPQAYQLENPSRLILDFDKAQQNLKQNSV
AVATSEASSVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSAGVAGTAQPVAQKSAQGISNIGFNRGSDGEGLVV
IDLQGSNTPVDVQQQGSKIVVRTLGNKVPSHLTRRLNVNDFATPVSTIDAQNDGSNGVITIQSSGSYEYMAYQAENKLTI
SLKRPVDKNPLKPRAANTYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAMAQSVKLAPLQTEYIQLNYAKATDIEKLITQGKNSSNNRGSGSGTDADSVGSL
LSPRGTISVDPRTNTIIVNDTAQKIDQIRKMIDLLDVSVKQVMVEARIVRATTDFTKEMGVKWGILSQGITNNNNLLVGG
SDTTLWNLREPEEDDVTGGYKYTIERPQNLNVDLGVTTSGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTA
DKQAAKVMSGTQIPYQSAEGGGVNAVSKTEFVDATLSLDVTPSITPDGKIQMMLDITNDSVGTATPTGQFTINKNQINTN
VLVDNGETVVLGGIFEQVSTNTQIKVPFLGDLPYIGRLFRKDSKSDKKSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=313852 CDG61_RS01840 WP_171405620.1 302398..304524(+) (pilQ) [Acinetobacter sp. WCHAc010052]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGTGCAGTGGCAATGGCTGTTATGCAGGCTGCCAGCGCTCAGGTCAGTAT
TACGAATATCGTACCTATGCAGATACCGGGGCAGGGAACAGAAGTTCGCGTGATGTTCAATGGATTGCCTCCGCAGCCTC
AGGCTTATCAGCTTGAGAATCCATCCAGATTAATCCTGGATTTTGATAAAGCTCAGCAGAATCTGAAACAGAACTCAGTT
GCTGTAGCAACCAGTGAAGCAAGCTCTGTCGATGTGACTTCAGATGCACAGCGTTCCAGGCTGACGGTTAACCTTGCAGA
TGCTGGTGCTTTCACCACACGTGTTGAAGGTAATACGTTCATCCTGAAAATTAACTCTGCGGGTGTGGCAGGAACAGCTC
AGCCTGTTGCTCAGAAATCTGCACAGGGGATTTCCAATATTGGATTTAACAGAGGCTCTGATGGTGAAGGCCTGGTGGTG
ATTGATCTGCAGGGAAGCAATACACCTGTCGATGTTCAGCAGCAGGGCAGTAAGATCGTGGTCAGAACACTGGGAAATAA
AGTCCCATCACATCTGACGCGCCGTCTGAATGTTAATGATTTTGCGACTCCTGTTTCAACCATTGACGCGCAGAATGATG
GCAGTAATGGTGTGATTACGATTCAGTCATCTGGCAGCTACGAATACATGGCTTACCAGGCTGAAAATAAACTGACAATC
AGTCTAAAGCGACCAGTGGATAAAAACCCACTGAAACCACGTGCTGCTAATACTTATACAGGTAAGAAGATTTCCCTGGA
CTTCCAGGATATCGAAGTTCGTCGTGTACTCCAGTTACTGGCAGATTTTACCGGTATTAATATGGTTGCAGCAGATACGG
TTCAGGGAAATATTACTTTGCGTCTGAAGGATGTTCCCTGGGATCAGGCACTTGATATTATTCTGAAAACCAAAAATCTT
GATAAACGCCGTAATGGTAATGTGATCTGGATTGCTCCGGTTTCAGAGCTGATCAAGGCTGAAGAAGAAGAAGCCAAAGC
AATGGCGCAGAGTGTGAAACTGGCGCCACTGCAGACTGAATATATTCAGCTGAACTATGCGAAAGCAACAGATATCGAAA
AACTGATTACACAGGGTAAAAACTCTTCAAACAATAGAGGTTCAGGGTCAGGAACGGATGCTGACAGTGTAGGTAGTTTA
CTGAGTCCACGTGGAACGATTTCGGTTGATCCAAGAACCAACACGATTATTGTCAATGACACCGCTCAGAAGATTGATCA
AATCCGAAAAATGATCGATCTGCTTGATGTTTCTGTAAAACAGGTGATGGTTGAAGCACGTATCGTCCGTGCAACAACTG
ACTTTACCAAAGAAATGGGTGTGAAGTGGGGCATTCTGTCTCAAGGGATTACGAATAATAATAACCTGTTGGTTGGTGGT
AGTGATACGACCCTATGGAACCTTCGTGAACCTGAAGAAGATGATGTAACCGGTGGTTATAAGTACACAATTGAACGTCC
ACAGAACCTGAACGTTGACCTGGGGGTGACGACTTCTGGAGCAAGTAAAATTGCTTTTGGTCTGATCAGTCTGTCTGATT
TCATGCTAGATCTTGAATTGTCTGCATTACAGGCAGATGGCTATGGTGAAGTAATTTCAACACCGAAAGTTTTAACTGCG
GATAAGCAGGCTGCCAAAGTGATGTCCGGTACGCAGATTCCTTATCAGTCAGCTGAAGGTGGTGGTGTAAATGCTGTGTC
CAAGACAGAGTTTGTTGATGCAACACTGAGTCTGGATGTGACGCCGAGTATCACACCTGATGGTAAGATTCAGATGATGC
TGGATATCACAAATGACTCAGTGGGCACTGCAACTCCAACGGGTCAGTTCACCATCAATAAAAACCAGATCAACACGAAT
GTGCTGGTGGATAATGGTGAGACGGTTGTACTGGGTGGGATATTTGAACAGGTCTCAACCAATACTCAGATCAAGGTACC
TTTCCTGGGCGATCTGCCATATATTGGTCGACTGTTCCGTAAAGACTCCAAGTCTGACAAAAAGAGCGAGTTGCTGATTT
TTGTTACACCACGAATAGTTAATGACAGTGTTTCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-441)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.424

100

0.79
  pilQ Acinetobacter baumannii strain A118

77.285

100

0.788
  comQ Acinetobacter baylyi ADP1

73.324

100

0.742
  pilQ Pseudomonas aeruginosa PAK

41.631

98.729

0.411
  pilQ Legionella pneumophila strain ERS1305867

39.598

98.446

0.39
  pilQ Legionella pneumophila strain Lp02

39.168

98.446

0.386

Multiple sequence alignment