Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CDG61_RS01835 Genome accession   NZ_CP032143
Coordinates   301813..302337 (+) Length   174 a.a.
NCBI ID   WP_087549838.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296813..307337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS01820 (CDG61_01820) pilM 299362..300420 (+) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  CDG61_RS01825 (CDG61_01825) pilN 300420..301088 (+) 669 WP_087549836.1 PilN domain-containing protein Machinery gene
  CDG61_RS01830 (CDG61_01830) pilO 301085..301813 (+) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG61_RS01835 (CDG61_01835) pilP 301813..302337 (+) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  CDG61_RS01840 (CDG61_01840) pilQ 302398..304524 (+) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG61_RS01845 (CDG61_01845) aroK 304560..305099 (+) 540 WP_087549840.1 shikimate kinase AroK -
  CDG61_RS01850 (CDG61_01850) aroB 305125..306204 (+) 1080 WP_087549841.1 3-dehydroquinate synthase -
  CDG61_RS01855 (CDG61_01855) - 306215..307042 (+) 828 WP_087549842.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19003.01 Da        Isoelectric Point: 7.1655

>NTDB_id=313851 CDG61_RS01835 WP_087549838.1 301813..302337(+) (pilP) [Acinetobacter sp. WCHAc010052]
MKTKISLALVAGLLLAGCDSRIDAVNQQMADIRNQPPIPIEAAPVFEPAPTFNYSAHQLKSPFMPSSLAAELKIMAGKRV
YPNLNRQPQPLESYALEALNMKGSMRSQTGDVLALIQTPDGEVERVQRGSYMGMNHGRVVNITPTQIDLLEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=313851 CDG61_RS01835 WP_087549838.1 301813..302337(+) (pilP) [Acinetobacter sp. WCHAc010052]
ATGAAAACAAAAATTTCTCTCGCTTTAGTTGCAGGTCTGTTGCTGGCAGGATGTGATTCGCGTATTGATGCAGTGAATCA
GCAGATGGCGGATATCCGTAATCAGCCACCGATTCCAATCGAAGCTGCACCTGTGTTTGAACCTGCGCCAACATTTAACT
ATTCGGCACATCAGCTGAAAAGTCCATTTATGCCAAGTTCACTGGCTGCTGAGCTGAAAATCATGGCGGGGAAACGGGTT
TATCCAAACCTGAACAGACAGCCTCAGCCACTTGAAAGCTATGCACTTGAAGCACTGAATATGAAAGGCAGTATGCGCAG
TCAGACGGGTGACGTGCTTGCTCTGATTCAGACGCCTGATGGTGAGGTTGAGCGTGTGCAGCGTGGCAGTTATATGGGGA
TGAATCATGGTCGTGTGGTGAATATCACGCCTACGCAGATTGACCTTTTGGAAATTATTCCGGATGGGCGTGAGGGCTAT
GTGGAACGGCCGAGAAGCCTGGTGTTAATAGGACCAGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.776
  comL Acinetobacter baylyi ADP1

68.966

100

0.69

Multiple sequence alignment