Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CDG61_RS01825 Genome accession   NZ_CP032143
Coordinates   300420..301088 (+) Length   222 a.a.
NCBI ID   WP_087549836.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295420..306088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS01810 (CDG61_01810) - 295734..296537 (+) 804 WP_087549834.1 putative RNA methyltransferase -
  CDG61_RS01815 (CDG61_01815) ponA 296620..299196 (-) 2577 WP_087549835.1 penicillin-binding protein PBP1a -
  CDG61_RS01820 (CDG61_01820) pilM 299362..300420 (+) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  CDG61_RS01825 (CDG61_01825) pilN 300420..301088 (+) 669 WP_087549836.1 PilN domain-containing protein Machinery gene
  CDG61_RS01830 (CDG61_01830) pilO 301085..301813 (+) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG61_RS01835 (CDG61_01835) pilP 301813..302337 (+) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  CDG61_RS01840 (CDG61_01840) pilQ 302398..304524 (+) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG61_RS01845 (CDG61_01845) aroK 304560..305099 (+) 540 WP_087549840.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24627.07 Da        Isoelectric Point: 5.1363

>NTDB_id=313849 CDG61_RS01825 WP_087549836.1 300420..301088(+) (pilN) [Acinetobacter sp. WCHAc010052]
MARINLLPWRDALREKRKKEFIAICIGAALIGVLAVVLAWFFYDQKLQDQEQANQLVISTNQNLDVQLKSLEGLQDQRNA
IVERMKLIQGLQGQRPVTVRLVDELVRVTPASMYITKFDRLGDKFTIEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KDEDKNKTQTSVVPRVEESYGTFVVTADLDEIAAPVTSEKTADTAAVSAATTTTGSTAGAAQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=313849 CDG61_RS01825 WP_087549836.1 300420..301088(+) (pilN) [Acinetobacter sp. WCHAc010052]
ATGGCAAGAATTAACCTGCTCCCTTGGCGTGATGCGTTAAGGGAAAAACGAAAAAAAGAATTTATAGCAATCTGTATTGG
GGCTGCTTTAATTGGGGTGCTTGCTGTTGTACTGGCATGGTTCTTCTATGATCAGAAACTTCAGGATCAGGAACAGGCGA
ATCAGCTGGTGATCAGTACCAATCAGAATCTTGATGTTCAGCTCAAATCACTTGAGGGACTCCAGGATCAGCGTAATGCG
ATTGTGGAACGGATGAAGCTGATTCAGGGGCTGCAAGGGCAGAGACCGGTTACAGTGCGTCTTGTGGATGAGCTTGTACG
TGTTACACCTGCATCTATGTACATTACAAAGTTTGATCGGCTGGGAGATAAATTCACAATTGAAGGTAAGGCGGAAAGCC
CAAATACAGTGGCTGAATTCCTGAGAAATCTGGAAGCATCTCCGTGGTACCGCAACGCATTTATGAATTCATTCCTGGCA
AAAGATGAAGATAAGAATAAAACCCAGACTTCAGTTGTGCCTCGTGTTGAAGAAAGCTATGGAACTTTTGTGGTTACAGC
GGATCTCGACGAAATTGCAGCACCGGTAACATCAGAAAAAACTGCTGATACAGCAGCGGTATCTGCGGCTACAACAACGA
CTGGTTCAACAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

65.766

100

0.658
  comN Acinetobacter baylyi ADP1

68.571

94.595

0.649

Multiple sequence alignment