Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   D0851_RS16185 Genome accession   NZ_CP031848
Coordinates   3442651..3444732 (+) Length   693 a.a.
NCBI ID   WP_205422227.1    Uniprot ID   -
Organism   Marinobacter sp. Arc7-DN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3437651..3449732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0851_RS16165 (D0851_16165) pilM 3439796..3440860 (+) 1065 WP_117619546.1 pilus assembly protein PilM Machinery gene
  D0851_RS16170 (D0851_16170) - 3440860..3441423 (+) 564 WP_117619547.1 PilN domain-containing protein -
  D0851_RS16175 (D0851_16175) - 3441423..3442034 (+) 612 WP_117619548.1 type 4a pilus biogenesis protein PilO -
  D0851_RS16180 (D0851_16180) - 3442037..3442585 (+) 549 WP_117619549.1 pilus assembly protein PilP -
  D0851_RS16185 (D0851_16185) pilQ 3442651..3444732 (+) 2082 WP_205422227.1 type IV pilus secretin PilQ Machinery gene
  D0851_RS16190 (D0851_16190) aroK 3444871..3445437 (+) 567 WP_117619551.1 shikimate kinase AroK -
  D0851_RS16195 (D0851_16195) aroB 3445430..3446524 (+) 1095 WP_117619552.1 3-dehydroquinate synthase -
  D0851_RS16200 (D0851_16200) - 3446592..3447998 (+) 1407 WP_117619553.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 74221.32 Da        Isoelectric Point: 4.3075

>NTDB_id=311857 D0851_RS16185 WP_205422227.1 3442651..3444732(+) (pilQ) [Marinobacter sp. Arc7-DN-1]
MFRKLNVYVSVIAFGLFSGLANAVTLEDVSFSSLPGERLEVTLEFDGPPPEPTGYTIERPARIAVDLRDTISGLDSRSIP
LGSGNAQSMTVVETRDRTRLIFNLVELVPYDTVRSGDSLVMTIGGEAGGEAQGAVAGAPASSSQSSPGASASSSANALGG
VDFRRGKEGEGRVLVDLGSSGTPVDLSERAGKIRLTMDGITVPANLRRRLDVTDFATPVTRIDTFVEDGNAVVEISPAGN
YDYIAYQSGSQFTVSVEKLTEQEAESRREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNV
PWDQALDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETNKQIAELAPVRLDIVQVNYAKAADIVALIKEDEELISD
RGFVSSDVRTNTISIRETAQKLEEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQQ
SLQEARDAAAGNSSTITFPGALAVDLGVSGEGASSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKS
GEEIPYQEAASSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNQVTTQVLVGNGETVVLGG
IFQSEVATQTTKTPFLGDIPYLGRLFKRTEKIDERSELLIFITPKIIKSDLVR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=311857 D0851_RS16185 WP_205422227.1 3442651..3444732(+) (pilQ) [Marinobacter sp. Arc7-DN-1]
ATGTTCAGAAAACTCAATGTATACGTCAGCGTGATTGCTTTTGGGTTGTTCTCCGGCCTGGCCAACGCGGTCACGCTGGA
AGACGTGTCGTTTTCGTCGCTACCGGGCGAACGGCTTGAAGTGACACTGGAATTCGATGGGCCGCCGCCGGAACCCACCG
GTTACACCATTGAGCGCCCTGCTCGCATCGCTGTCGACCTGAGGGACACGATCAGCGGTCTGGACAGTCGCAGCATTCCT
CTGGGGTCTGGTAACGCCCAGAGTATGACGGTGGTGGAAACCAGGGACCGAACGCGGCTGATCTTCAACCTCGTTGAACT
GGTTCCTTACGACACGGTTCGCAGTGGCGATTCACTGGTTATGACTATTGGTGGCGAGGCTGGGGGCGAGGCTCAGGGTG
CCGTGGCTGGCGCGCCTGCTTCGTCCTCCCAGAGTAGCCCGGGAGCATCGGCTTCTTCTTCGGCCAACGCCCTTGGCGGT
GTGGATTTCCGTCGTGGCAAAGAGGGGGAAGGCCGGGTTCTTGTCGATCTGGGCAGCTCCGGCACGCCAGTGGACTTGTC
GGAACGGGCTGGCAAAATCCGGCTGACCATGGATGGCATTACCGTTCCTGCCAATCTGCGTCGCCGGCTGGACGTTACTG
ATTTTGCAACGCCGGTTACCCGCATCGATACCTTTGTTGAAGATGGCAATGCGGTGGTCGAGATCAGCCCGGCAGGGAAT
TACGATTATATTGCCTATCAGTCCGGCAGCCAGTTCACGGTCAGTGTGGAAAAGCTTACTGAACAGGAGGCAGAGTCACG
CCGTGAAGAGAAGTTCCCGTATACCGGCGAGAAGCTCTCCCTGAACTTTCAGGACATTGAGGTTCGTTCGGTTCTCCAGC
TGATTGCGGATTTCACAGGCCTGAACCTGGTCGCCAGTGACACGGTGGGTGGCAGCATCACGCTTCGTTTGCAAAATGTT
CCCTGGGACCAGGCTCTGGATCTGATTCTGAAGACCAAGGGGCTCGACAAGCGGCAGATCGGTAACGTGTTGCTGGTGGC
TCCGGCAGATGAGATTGCTGCCCGGGAAAAGCTGGAGCTGGAAACCAATAAACAGATTGCAGAGCTGGCGCCGGTACGGC
TGGATATTGTTCAGGTCAACTACGCCAAGGCTGCCGACATTGTTGCCCTGATCAAGGAAGATGAGGAGCTGATTTCAGAC
CGTGGATTTGTCTCCTCGGATGTTCGCACCAACACCATCAGTATTCGTGAGACTGCGCAAAAGCTCGAGGAAATCCGTCG
GCTTGTCTCCACATGGGATGTGCCGGTGCGGCAGGTATCCATCGAGGCGCGAATTGTCCGGGCCCAGACCAATGTGGCGG
AAAACCTTGGTGTTCGCTGGGGTGGTGCTGCTTACGATGTGAGCGGCGATAATGTATTCACTGTCGGTGGCTCGCAGCAA
TCCTTGCAGGAGGCGCGTGATGCTGCAGCAGGAAACAGCAGTACAATCACCTTCCCGGGTGCGCTGGCGGTCGACCTCGG
TGTGAGCGGTGAAGGCGCCTCCTCGTTTGCCATTGGCTGGGGCAGCGATGACTTCCTGGTTGACCTGGAGCTGTCTGCGC
TGGAGAGCGACGGTCAGGCCGAAGTGGTTTCACAGCCTCGTGTTGTGACCGCGGATCGCCAGACAGCGTCTATCAAATCC
GGTGAGGAAATTCCTTACCAGGAAGCTGCTTCCAGCGGTGCGACATCGGTCTCGTTCAAGGAAGCCGTGCTTTCTCTCGA
GGTGACGCCGCAAATCACCCCGGATGACAAGATTATTATGGATCTGGTGGTCAACCAGGACTCCCGTGGTGAAGTTACCG
CCGGTATTCCTTCGATCAATACCAACCAGGTAACCACCCAGGTTCTGGTTGGCAACGGAGAGACGGTGGTGCTGGGTGGT
ATCTTCCAGTCGGAAGTTGCGACCCAAACTACGAAGACCCCGTTCCTTGGAGATATTCCCTACCTGGGTCGTCTTTTCAA
GCGTACCGAGAAAATTGATGAGCGCAGTGAGCTGTTAATTTTCATAACGCCCAAGATCATCAAGAGCGATCTTGTCCGGT
AA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-438)

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(533-688)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.857

100

0.494
  pilQ Acinetobacter baumannii D1279779

39.946

100

0.424
  pilQ Acinetobacter baumannii strain A118

39.946

100

0.424
  comQ Acinetobacter baylyi ADP1

40.871

100

0.42
  pilQ Legionella pneumophila strain ERS1305867

40.648

97.98

0.398
  pilQ Legionella pneumophila strain Lp02

40.501

97.98

0.397

Multiple sequence alignment