Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   D0638_RS05060 Genome accession   NZ_CP031785
Coordinates   956983..958224 (+) Length   413 a.a.
NCBI ID   WP_149349851.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain 10266     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951983..963224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0638_RS05035 (D0638_05040) yfmH 952939..954231 (+) 1293 WP_003583955.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  D0638_RS05040 (D0638_05045) ymfI 954231..954959 (+) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  D0638_RS05045 (D0638_05050) - 955046..955975 (+) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  D0638_RS05050 (D0638_05055) pgsA 955972..956565 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D0638_RS05060 (D0638_05065) cinA 956983..958224 (+) 1242 WP_149349851.1 competence/damage-inducible protein A Machinery gene
  D0638_RS05065 (D0638_05070) recA 958281..959342 (+) 1062 WP_003583962.1 recombinase RecA Machinery gene
  D0638_RS05070 (D0638_05075) rny 959637..961208 (+) 1572 WP_003657913.1 ribonuclease Y -
  D0638_RS05075 (D0638_05080) - 961347..962591 (-) 1245 WP_013245703.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44278.60 Da        Isoelectric Point: 5.8089

>NTDB_id=311432 D0638_RS05060 WP_149349851.1 956983..958224(+) (cinA) [Lacticaseibacillus paracasei strain 10266]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNEQHTYVLLPGPPKELVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSAYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=311432 D0638_RS05060 WP_149349851.1 956983..958224(+) (cinA) [Lacticaseibacillus paracasei strain 10266]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGTTTAG
CGGTTGGTGCGTGGATCGTCAATGAGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAACTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCAGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGTGCATTTCAAGCAGCGTTAGGCGATGTGC
CAGGGGTATCGGCTTATTTTAAGGGCGGTTTTGTCACGTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGTGGTCGCAATGATGTCCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.887

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.773

100

0.53
  cinA Streptococcus mutans UA159

52.415

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.185

100

0.523
  cinA Streptococcus pneumoniae R6

51.185

100

0.523
  cinA Streptococcus pneumoniae D39

50.948

100

0.521
  cinA Bacillus subtilis subsp. subtilis str. 168

45.499

99.516

0.453
  cinA Streptococcus suis isolate S10

42.593

91.525

0.39

Multiple sequence alignment