Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CJA_RS13185 Genome accession   NC_010995
Coordinates   3212098..3213384 (+) Length   428 a.a.
NCBI ID   WP_012488325.1    Uniprot ID   B3PBG4
Organism   Cellvibrio japonicus Ueda107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3194456..3213384 3212098..3213384 within 0


Gene organization within MGE regions


Location: 3194456..3213384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJA_RS13125 (CJA_2719) - 3194507..3195325 (+) 819 WP_012488313.1 ABC transporter permease -
  CJA_RS13130 (CJA_2720) - 3195398..3196171 (+) 774 WP_012488314.1 ABC transporter ATP-binding protein -
  CJA_RS13135 (CJA_2721) - 3196202..3196939 (+) 738 WP_012488315.1 urea amidolyase associated protein UAAP1 -
  CJA_RS13140 (CJA_2722) - 3196957..3197598 (+) 642 WP_012488316.1 urea amidolyase associated protein UAAP2 -
  CJA_RS13145 (CJA_2723) uca 3197686..3201303 (+) 3618 WP_012488317.1 urea carboxylase -
  CJA_RS13150 (CJA_2724) - 3201370..3203835 (-) 2466 WP_012488318.1 DUF1631 domain-containing protein -
  CJA_RS13155 (CJA_2725) nadC 3204037..3204921 (+) 885 WP_012488319.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CJA_RS13160 (CJA_2726) - 3204955..3207981 (-) 3027 WP_012488320.1 fused MFS/spermidine synthase -
  CJA_RS13165 (CJA_2727) tfpZ 3208083..3208826 (-) 744 WP_012488321.1 TfpX/TfpZ family type IV pilin accessory protein -
  CJA_RS19890 (CJA_2728) - 3208852..3209337 (-) 486 WP_012488322.1 pilin -
  CJA_RS20025 - 3209443..3209760 (-) 318 WP_238526867.1 pilin -
  CJA_RS20030 - 3209835..3209943 (-) 109 Protein_2594 pilin -
  CJA_RS13180 (CJA_2730) pilB 3210370..3212091 (+) 1722 WP_012488324.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CJA_RS13185 (CJA_2731) pilC 3212098..3213384 (+) 1287 WP_012488325.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 45936.18 Da        Isoelectric Point: 10.0260

>NTDB_id=31129 CJA_RS13185 WP_012488325.1 3212098..3213384(+) (pilC) [Cellvibrio japonicus Ueda107]
MATVSATKTASTAKNKTAAVKVKAKPSQTTNTYIYKGVDRKGSKIQGEINGTSPAIVKALLIKQGINVKSVSKKSKPLFG
TSGKAIKPADIAVFSRQMATMMKAGVPLVQAFDIVADGLENPNMKSLVLEIRDDVAAGGGFAASLRKHPRYFDDLFCNLV
DAGEQSGALETMLDRIATYKEKTEALKAKIKKAMTYPIAVIVVAIVVTGILLVKVVPQFAATFASFGADLPAFTLFVLHL
SDLAQQWWFLGMIGIGGSFYLFKEAKLRSKKFAYLVDRYVLKLPIIGKIVYLSIMARFARTLSTTFAAGVPLIDALTSVA
GAAGNRIYSDAILKVREDVSTGIQLNAALRSGNLFPTLLVQMSAIGEESGALDEMLDKVAIYYEGEVDNMVDNLTSLLEP
MIISVLGILVGGLMVAMYLPIFQIGAVI

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=31129 CJA_RS13185 WP_012488325.1 3212098..3213384(+) (pilC) [Cellvibrio japonicus Ueda107]
ATGGCAACAGTATCAGCAACCAAAACCGCCAGTACTGCTAAAAACAAAACTGCAGCAGTAAAAGTAAAGGCCAAACCAAG
CCAAACAACCAATACATATATCTATAAGGGTGTTGATAGAAAAGGAAGTAAAATCCAAGGAGAGATTAATGGCACAAGCC
CAGCGATCGTCAAAGCCTTACTTATCAAACAAGGAATAAATGTTAAAAGTGTTAGCAAGAAATCCAAACCTTTGTTTGGG
ACTTCGGGTAAAGCAATCAAGCCAGCCGATATTGCTGTTTTTTCACGACAAATGGCAACAATGATGAAAGCTGGTGTCCC
TTTAGTGCAAGCATTCGACATTGTTGCTGATGGCTTAGAAAATCCCAACATGAAAAGCCTTGTACTCGAGATTCGAGATG
ATGTAGCAGCAGGTGGTGGCTTTGCAGCTTCATTGCGTAAGCATCCCAGATACTTCGATGACCTCTTTTGCAACCTGGTA
GATGCTGGTGAGCAATCTGGTGCATTGGAGACGATGCTAGATCGTATTGCTACCTATAAAGAAAAGACTGAAGCATTGAA
GGCCAAAATCAAAAAGGCAATGACCTATCCAATAGCCGTAATTGTTGTGGCTATTGTTGTCACGGGGATCCTGCTCGTAA
AAGTAGTTCCACAATTTGCAGCAACCTTTGCCAGTTTTGGCGCTGACTTGCCAGCTTTTACACTATTTGTGTTACACCTG
TCTGATCTTGCTCAGCAATGGTGGTTCTTAGGCATGATTGGTATTGGAGGTTCCTTTTATCTCTTTAAAGAGGCAAAACT
TCGCTCCAAGAAGTTCGCTTATTTAGTGGATCGCTATGTTCTAAAACTGCCAATTATTGGCAAAATTGTCTATTTATCCA
TCATGGCTCGATTTGCAAGAACGTTGTCCACTACATTTGCTGCAGGCGTTCCCCTAATTGACGCACTGACCTCAGTTGCA
GGTGCTGCGGGAAATCGCATTTACAGTGATGCGATTTTAAAGGTACGAGAAGATGTATCTACCGGTATCCAACTGAATGC
TGCATTACGCTCTGGGAATCTCTTCCCTACCTTACTAGTGCAAATGTCTGCCATTGGTGAAGAATCCGGTGCTCTGGATG
AAATGTTGGATAAAGTAGCCATCTATTATGAGGGAGAAGTAGATAATATGGTGGATAACCTGACCTCTCTTCTGGAACCC
ATGATTATATCTGTACTAGGGATTCTCGTAGGTGGACTGATGGTAGCTATGTATTTGCCCATTTTCCAAATTGGTGCTGT
TATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(298-420)

Type II secretion system (T2SS), protein F (T2SSF)

(94-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3PBG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.457

94.626

0.6
  pilC Acinetobacter baylyi ADP1

60.837

94.86

0.577
  pilC Acinetobacter baumannii D1279779

60.494

94.626

0.572
  pilC Legionella pneumophila strain ERS1305867

57.179

92.757

0.53
  pilG Neisseria gonorrhoeae MS11

43.325

92.757

0.402
  pilG Neisseria meningitidis 44/76-A

43.325

92.757

0.402
  pilC Vibrio campbellii strain DS40M4

41.646

93.692

0.39
  pilC Vibrio cholerae strain A1552

40.786

95.093

0.388

Multiple sequence alignment