Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D0853_RS16300 Genome accession   NZ_CP031781
Coordinates   3241430..3242542 (-) Length   370 a.a.
NCBI ID   WP_005461424.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VPD14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3236430..3247542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0853_RS16270 (D0853_16305) hemF 3236891..3237808 (-) 918 WP_005461426.1 oxygen-dependent coproporphyrinogen oxidase -
  D0853_RS16275 (D0853_16310) - 3237856..3238413 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  D0853_RS16280 (D0853_16315) purE 3238613..3239098 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  D0853_RS16285 (D0853_16320) - 3239103..3240236 (+) 1134 WP_005461432.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  D0853_RS16290 (D0853_16325) - 3240300..3240869 (-) 570 WP_005461441.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  D0853_RS16295 (D0853_16330) - 3240948..3241427 (-) 480 WP_005461440.1 DUF494 family protein -
  D0853_RS16300 (D0853_16335) dprA 3241430..3242542 (-) 1113 WP_005461424.1 DNA-processing protein DprA Machinery gene
  D0853_RS16305 (D0853_16340) - 3242526..3243620 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  D0853_RS16310 (D0853_16345) def 3243759..3244277 (+) 519 WP_005461416.1 peptide deformylase -
  D0853_RS16315 (D0853_16350) fmt 3244311..3245258 (+) 948 WP_005481155.1 methionyl-tRNA formyltransferase -
  D0853_RS16320 (D0853_16355) rsmB 3245339..3246622 (+) 1284 WP_005481161.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39855.48 Da        Isoelectric Point: 6.5873

>NTDB_id=311256 D0853_RS16300 WP_005461424.1 3241430..3242542(-) (dprA) [Vibrio parahaemolyticus strain VPD14]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAALAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=311256 D0853_RS16300 WP_005461424.1 3241430..3242542(-) (dprA) [Vibrio parahaemolyticus strain VPD14]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTGAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTTGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGCGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378

Multiple sequence alignment