Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0436_RS19830 Genome accession   NZ_CP031775
Coordinates   4547583..4548854 (+) Length   423 a.a.
NCBI ID   WP_208661339.1    Uniprot ID   -
Organism   Shewanella decolorationis strain Ni1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4542583..4553854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0436_RS19815 (D0436_02960) - 4543583..4543996 (+) 414 WP_302852168.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D0436_RS19820 (D0436_24170) - 4544044..4545471 (-) 1428 WP_216832051.1 O-antigen ligase -
  D0436_RS19825 (D0436_02950) pilB 4545788..4547500 (+) 1713 WP_208661341.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0436_RS19830 (D0436_02945) pilC 4547583..4548854 (+) 1272 WP_208661339.1 type II secretion system F family protein Machinery gene
  D0436_RS19835 (D0436_02940) pilD 4548982..4549908 (+) 927 WP_208661337.1 A24 family peptidase Machinery gene
  D0436_RS19840 (D0436_02935) coaE 4549972..4550589 (+) 618 WP_208661334.1 dephospho-CoA kinase -
  D0436_RS19845 (D0436_02930) zapD 4550582..4551316 (+) 735 WP_208661332.1 cell division protein ZapD -
  D0436_RS19850 (D0436_02925) yacG 4551424..4551633 (+) 210 WP_011621218.1 DNA gyrase inhibitor YacG -
  D0436_RS19855 (D0436_02920) mutT 4551668..4552060 (+) 393 WP_208661330.1 8-oxo-dGTP diphosphatase MutT -
  D0436_RS19860 (D0436_02915) - 4552201..4552737 (+) 537 WP_133179294.1 thioredoxin family protein -
  D0436_RS19865 (D0436_02910) - 4552812..4553738 (-) 927 WP_208661329.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46083.32 Da        Isoelectric Point: 10.2290

>NTDB_id=311151 D0436_RS19830 WP_208661339.1 4547583..4548854(+) (pilC) [Shewanella decolorationis strain Ni1-3]
MATATTTKKPRSKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQVATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=311151 D0436_RS19830 WP_208661339.1 4547583..4548854(+) (pilC) [Shewanella decolorationis strain Ni1-3]
ATGGCTACGGCAACGACAACAAAAAAGCCTCGGTCTAAAAAAATCGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAATCGCGACGGTCAGAAAACCAGTGGTGAGCTGAGGGGGGCTTCTGCGGCCGAAATCCGCAGTCAGC
TCAAATCTCAAGGAGTAAATCCTAAAACCGTACGCAAACAATCGGCCGCCCTGTTTAAATTAGGCGATGCCAAAATCACT
CCCATGGATATTGCTATGGTAACTCGGCAAGTTGCTACTATGCTTGCCGCTGGGGTGCCATTGGTCACCACAATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGCTGGCAACGATTCTTTCAGAAATCCAATCGGGTATTCCAT
TGTCCGATGCTTTGCGTCCTCACCGACGTTATTTTGATGATCTTTATGTCGATTTAGTTGCTGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACTTACCGTGAAAAGTCTGAAGCATTAAAATCAAAAATTAAAAAGGCCAT
GTTTTATCCGGCAGCAGTAGTTATAGTCGCGATTTTAGTCACAACCCTGCTTTTACTCTTTGTAGTGCCACAATTTGAAG
AAATTTTTAAAGGCTTTGGCGCCGAGCTGCCAGCATTTACCCAATTGGTGTTGCATATCTCCCGCGGTTTACAATCCTCT
TGGTATATCTTTTTGGGCGCAATTGTGGCTGGTGTGTTTTTATTTGTCCGCGCCCACCGAAACTCTCAGATAGTGAGGGA
TAGAGTGGATGAAGTCATTTTAAAAATTCCTGCTATCGGGCCAATTTTACATAAAGGCGCTATGGCACGTTTTGCCCGCA
CTTTAGCGACCACCTTTGCAGCGGGTGTACCCTTAATTGACGGCTTAGAATCCGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAGGCTATCTTAAAAATCCGCCAAGAAGTAATGGCCGGGATGCAAATGAACGTGGCCATGCGGACCACAGGGCT
GTTTCCCGATATGTTGATCCAAATGGTGATGATTGGCGAAGAATCTGGCTCGCTCGATAATATGCTCAATAAGGTTTCAA
CCATCTATGAGATGCAAGTAGACGACGCTGTCGATGGTTTATCCAGCTTAATTGAACCCATTATGATGGTGGTGATTGGT
ACTGTTGTTGGTGGCCTTATTGTCGCTATGTATTTACCTATCTTCCAAATGGGTAAAGTGGTTGGCGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

93.617

0.515
  pilC Legionella pneumophila strain ERS1305867

50

95.508

0.478
  pilC Acinetobacter baumannii D1279779

50.251

94.09

0.473
  pilC Acinetobacter baylyi ADP1

50.126

93.853

0.47
  pilC Vibrio cholerae strain A1552

48.12

94.326

0.454
  pilC Vibrio campbellii strain DS40M4

44.499

96.69

0.43
  pilG Neisseria meningitidis 44/76-A

41.791

95.035

0.397
  pilG Neisseria gonorrhoeae MS11

41.791

95.035

0.397

Multiple sequence alignment