Detailed information NTG0311152

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0436_RS19835
• Genome accession: NZ_CP031775
• Coordinates: 4548982..4549908 (+)
• Length: 308 a.a.
• NCBI ID: WP_208661337.1
• Uniprot ID: -
• Organism: Shewanella decolorationis strain Ni1-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4543982..4554908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0436_RS19820 (D0436_24170)	-	4544044..4545471 (-)	1428	WP_216832051.1	O-antigen ligase	-
D0436_RS19825 (D0436_02950)	pilB	4545788..4547500 (+)	1713	WP_208661341.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0436_RS19830 (D0436_02945)	pilC	4547583..4548854 (+)	1272	WP_208661339.1	type II secretion system F family protein	Machinery gene
D0436_RS19835 (D0436_02940)	pilD	4548982..4549908 (+)	927	WP_208661337.1	A24 family peptidase	Machinery gene
D0436_RS19840 (D0436_02935)	coaE	4549972..4550589 (+)	618	WP_208661334.1	dephospho-CoA kinase	-
D0436_RS19845 (D0436_02930)	zapD	4550582..4551316 (+)	735	WP_208661332.1	cell division protein ZapD	-
D0436_RS19850 (D0436_02925)	yacG	4551424..4551633 (+)	210	WP_011621218.1	DNA gyrase inhibitor YacG	-
D0436_RS19855 (D0436_02920)	mutT	4551668..4552060 (+)	393	WP_208661330.1	8-oxo-dGTP diphosphatase MutT	-
D0436_RS19860 (D0436_02915)	-	4552201..4552737 (+)	537	WP_133179294.1	thioredoxin family protein	-
D0436_RS19865 (D0436_02910)	-	4552812..4553738 (-)	927	WP_208661329.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34536.07 Da
• Isoelectric Point: 7.3448

>NTDB_id=311152 D0436_RS19835 WP_208661337.1 4548982..4549908(+) (pilD) [Shewanella decolorationis strain Ni1-3]
MTEFFTLLGHTFDQAPWLFILLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVIKQVGLEKLNKPIDNY
PEKYNLVVPGSACPKCKTAIKPWHNLPILGWLMLRGKCAACNAPISSRYPIIELITGLLVATLAWHFGPSWQFIFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGISLIISKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=311152 D0436_RS19835 WP_208661337.1 4548982..4549908(+) (pilD) [Shewanella decolorationis strain Ni1-3]
ATGACTGAATTTTTCACTTTATTGGGTCACACCTTTGACCAAGCACCATGGCTTTTTATCTTATTAAGTTTTGTGTTTGC
AGCTACCATTGGCAGCTTTTTAAATGTGGTTATTCACCGTTTTCCGGTGATGATGAAACGCGAATGGCAACAGGAGTGTA
ATCAATATCTGCAGGAATATCATGCAGATGTCATCAAACAAGTGGGTTTAGAAAAGCTTAACAAGCCTATAGATAACTAT
CCTGAAAAATACAATCTAGTGGTACCTGGCTCTGCCTGCCCTAAATGTAAAACCGCCATCAAGCCTTGGCATAATTTACC
CATCTTAGGTTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGCAATGCGCCAATCTCCTCACGCTACCCGATTATTGAGC
TAATAACAGGGTTACTCGTTGCAACACTCGCTTGGCATTTTGGGCCAAGCTGGCAATTTATTTTTGCTGCAATATTAACC
TTTGTATTAATTGCATTAACGGGTATCGATCTGGATGAAATGCTGCTTCCCGACCAAATGACCCTTCCACTGTTATGGCT
AGGATTACTGATTAACCTCAACCATACCTTTACCAATCCAACCGATGCCATTATCGGTGCTGCTGTTGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTGTTTAAGCTGTTAACAGGTAAAGAAGGCATGGGTTATGGCGATTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTCGGTTGGCAAATGCTGCCGCTGGTGATTTTACTCTCTTCTTTAGTCGGCGCGGTTGTCGGTATCAG
TCTAATAATTAGCAAGCGTAATCAGCTTGCTAATCCAATCCCCTTTGGGCCTTATATTGCCGCAGCAGGTTGGATCGCCC
TAATATGGGGACAACCTATAGTGGATTGGTATCTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.361	95.455	0.49
pilD	Vibrio campbellii strain DS40M4	49.333	97.403	0.481
pilD	Acinetobacter nosocomialis M2	49.827	93.831	0.468
pilD	Acinetobacter baumannii D1279779	49.481	93.831	0.464
pilD	Neisseria gonorrhoeae MS11	45.675	93.831	0.429