Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0Y50_RS14630 Genome accession   NZ_CP031769
Coordinates   3320007..3321215 (+) Length   402 a.a.
NCBI ID   WP_117317628.1    Uniprot ID   -
Organism   Salinimonas sediminis strain N102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315007..3326215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y50_RS14605 (D0Y50_14605) ampE 3316013..3316990 (-) 978 WP_108567562.1 regulatory signaling modulator protein AmpE -
  D0Y50_RS14610 (D0Y50_14610) ampD 3317100..3317645 (-) 546 WP_108567561.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D0Y50_RS14615 (D0Y50_14615) - 3317847..3318353 (+) 507 WP_117317622.1 TIGR02281 family clan AA aspartic protease -
  D0Y50_RS14620 (D0Y50_14620) nadC 3318384..3319244 (+) 861 WP_117317624.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D0Y50_RS14625 (D0Y50_14625) - 3319501..3319947 (+) 447 WP_117317626.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  D0Y50_RS14630 (D0Y50_14630) pilC 3320007..3321215 (+) 1209 WP_117317628.1 type II secretion system F family protein Machinery gene
  D0Y50_RS14635 (D0Y50_14635) - 3321617..3322582 (+) 966 WP_117317630.1 A24 family peptidase -
  D0Y50_RS14640 (D0Y50_14640) coaE 3322579..3323181 (+) 603 WP_117317632.1 dephospho-CoA kinase -
  D0Y50_RS14645 (D0Y50_14645) zapD 3323251..3324003 (+) 753 WP_108567554.1 cell division protein ZapD -
  D0Y50_RS14650 (D0Y50_14650) yacG 3324124..3324357 (+) 234 WP_108567553.1 DNA gyrase inhibitor YacG -
  D0Y50_RS14655 (D0Y50_14655) - 3324367..3325233 (+) 867 WP_117317634.1 aspartoacylase -
  D0Y50_RS14660 (D0Y50_14660) mutT 3325485..3325886 (-) 402 WP_108567551.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43465.03 Da        Isoelectric Point: 9.9574

>NTDB_id=311072 D0Y50_RS14630 WP_117317628.1 3320007..3321215(+) (pilC) [Salinimonas sediminis strain N102]
MSKTAAVFDWQGKDRHGSSRKGEISALSLAEAKNLLRRQGISANKVKKQQKSLFGGGKKINAADISVLTRQIATMLGAGV
TILQSLQMIAQGHGKPAMRKLLNSIADDVSAGTPLSNSLRKHPLYFDDLYCDLVHTGEQSGSLETIFDRLATYKEKAEAL
KSKIKKAMFYPIAVVVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRGMQDYGIFVAIGIAAFIFLFVRAH
RKSKKLRDNVDKLTLKLPVIGEILKKAAIARFTRTLSTTFSAGVPLIGALDSAAGASGNAVYRDAILFIKKEVAGGMQMN
TAMRATNVFPDMVNQMVAIGEESGAVDEMLSKVATIYEAEVDDMVDGLTSLLEPMIMSVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=311072 D0Y50_RS14630 WP_117317628.1 3320007..3321215(+) (pilC) [Salinimonas sediminis strain N102]
ATGTCAAAAACTGCAGCTGTATTTGATTGGCAAGGAAAAGACCGTCATGGTAGTAGCCGTAAAGGAGAAATTTCTGCCTT
AAGCCTGGCAGAAGCCAAAAATCTGCTGCGTCGCCAGGGCATTTCTGCCAATAAAGTTAAAAAACAGCAAAAATCCTTAT
TCGGCGGCGGTAAAAAAATCAACGCGGCCGATATTTCAGTGCTGACCCGCCAGATTGCTACGATGCTGGGCGCCGGCGTG
ACCATATTACAGTCGCTGCAAATGATAGCCCAGGGCCATGGCAAGCCGGCAATGCGTAAATTACTGAACAGCATTGCTGA
TGATGTCAGCGCGGGTACCCCGTTATCTAACTCCTTACGTAAACACCCCCTGTACTTTGATGATTTGTATTGCGACCTGG
TGCATACCGGGGAGCAGTCGGGTTCGCTGGAAACCATTTTTGACCGGCTGGCAACCTACAAAGAAAAAGCCGAAGCCCTT
AAAAGTAAAATCAAAAAAGCCATGTTCTACCCTATTGCGGTAGTCGTAGTGGCATTTATTGTTACTACAATATTGCTAAT
ATTTGTGGTGCCCCAGTTTGAAGAAATCTTTTCAAGTTTTGGCGCCGAATTACCCGCGTTTACCCAGTTTGTACTGGCCA
TATCCCGGGGTATGCAGGATTACGGCATATTTGTGGCAATAGGTATTGCTGCGTTTATCTTTTTGTTTGTTCGGGCTCAT
CGCAAATCAAAAAAATTACGTGACAATGTAGACAAGCTGACCTTAAAACTGCCGGTAATTGGCGAAATACTGAAAAAAGC
CGCTATTGCCCGGTTTACCCGTACCCTGTCTACCACCTTTTCGGCCGGGGTACCGCTGATTGGCGCGCTGGACTCTGCTG
CCGGGGCTTCCGGTAATGCGGTGTATCGCGATGCCATCTTATTTATTAAAAAAGAAGTAGCGGGCGGTATGCAAATGAAC
ACCGCCATGCGCGCCACCAATGTATTTCCGGATATGGTGAACCAAATGGTGGCAATCGGCGAAGAGTCAGGTGCGGTTGA
TGAAATGCTAAGCAAGGTCGCCACCATTTATGAAGCAGAAGTAGATGATATGGTAGACGGCCTCACCAGCCTGCTCGAGC
CAATGATTATGTCTGTGCTGGGCGTGGTAATAGGCGGCTTAATTGTGGCCATGTATTTGCCTATATTCCAAATGGGTAAT
GTGGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.705

98.756

0.599
  pilC Legionella pneumophila strain ERS1305867

53.769

99.005

0.532
  pilC Acinetobacter baylyi ADP1

52.854

100

0.53
  pilC Acinetobacter baumannii D1279779

53.652

98.756

0.53
  pilC Vibrio cholerae strain A1552

47.222

98.507

0.465
  pilC Vibrio campbellii strain DS40M4

44.444

98.507

0.438
  pilG Neisseria gonorrhoeae MS11

43.069

100

0.433
  pilG Neisseria meningitidis 44/76-A

43.99

97.264

0.428
  pilC Thermus thermophilus HB27

38.71

100

0.388

Multiple sequence alignment